Hg_chrom7_TN10mRNA_14171
Organism: Heterodera glycines Gene Locus: chr7:5751822-5758949 Feature type: polypeptideProtein Sequence
Length: 1,527
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.226 | 1.432 | 0.81 | 0.474 | 0.786 | 1.746 | 0.881 | 1.408 | 0.597 | 0.85 | 0.774 | 1.387 | 0.491 | 1.02 | 1.109 | 1.834 | 1.245 | 0.734 | 0.453 | 0.27 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13373
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.952
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRKL,TGRRGRRKGR,RKRPLRLEERKKAEMDRKR,KRPLRLEERKKAEMDRKRA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.962
|
0.061
|
0.027
|
0.235
|
0.055
|
0.018
|
0.026
|
0.017
|
0.083
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011333
|
1.000
|
1.000
|
Hsc_gene_8222.t1
|
Hsc_gene_8222.t1
|
— | — |
KAF7636996.1 FHA domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
— |
IPR000253+57-116_58-116_58-131+|IPR008984+48-133+|IPR011011+1446-1503+|IPR013083+1454-1512+
|
SM00240+57-116+
|
PF00498+58-131+FHA_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
583-1459;1502-1527
|
2.000
|
1-582;1460-1501
|
5c11_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.953
|
162264.090
|
9.136
|
42.500
|
22.528
|
6.090
|
55.927
|
44.073
|
13.360
|
9.168
|
60.511
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
4786.130
|
8904.335
|
5528.599
|
3128.274
|
2693.732
|
3878.045
|
3158.694
|
4231.896
|
7573.205
|
3438.076
|
5210.274
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.917
|
-1.646
|
-0.713
|
-0.248
|
0.541
|
-0.286
|
— | — | — |
-1.117
|
— | — | — |
No JSON data available for plots.