Hg_chrom7_TN10mRNA_14172
Organism: Heterodera glycines Gene Locus: chr7:5767849-5772783 Feature type: polypeptideProtein Sequence
Length: 808
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.108 | 0.863 | 0.765 | 0.854 | 1.258 | 0.889 | 0.751 | 1.176 | 1.293 | 1.254 | 0.525 | 1.747 | 1.341 | 0.714 | 1.339 | 1.079 | 0.771 | 0.938 | 1.333 | 1.056 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13374
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RKKRRKGRGDGR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.118
|
0.149
|
0.012
|
0.155
|
0.223
|
0.360
|
0.294
|
0.092
|
0.707
|
0.068
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011334
|
1.000
|
1.000
|
Hsc_gene_8224.t1
|
Hsc_gene_8223.t1;Hsc_gene_8224.t1
|
— |
Q66KG0.2 Solute carrier family 22 member 16 [Xenopus laevis]
|
KAI1721952.1 sugar transporter domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0022857|GO:0055085
|
GO:0008150_0.964|GO:0009987_0.934|GO:0003674_0.833|GO:0005575_0.813|GO:0110165_0.813|GO:0006810_0.809|GO:0051179_0.809|GO:0051234_0.809|GO:0016020_0.773|GO:0055085_0.744|GO:0071944_0.741|GO:0005886_0.732|GO:0005215_0.677|GO:0022857_0.677|GO:0071705_0.532
|
IPR005828+344-726+|IPR005829+358-375+|IPR020846+281-721+|IPR036259+316-731_344-726+
|
— |
PF00083+344-726+Sugar_(and_other)_transporter
|
— |
PTHR24064+190-727+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-17;60-163;744-808
|
2.000
|
18-59;164-743
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.541
|
90792.770
|
6.126
|
-4.500
|
24.134
|
12.500
|
43.564
|
56.436
|
12.376
|
11.757
|
48.391
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
1129.717
|
747.643
|
2319.972
|
960.012
|
663.874
|
1571.823
|
1489.370
|
2246.957
|
995.355
|
446.128
|
681.511
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.404
|
0.224
|
-1.164
|
-0.564
|
1.258
|
— |
0.414
|
-0.452
|
— | — | — | — | — |
No JSON data available for plots.