Hg_chrom7_TN10mRNA_14174
Organism: Heterodera glycines Gene Locus: chr7:5776592-5779293 Feature type: polypeptideProtein Sequence
Length: 212
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.316 | 0.439 | 0.772 | 0.488 | 1.336 | 1.089 | 0.786 | 1.887 | 1.572 | 1.275 | 0.572 | 1.942 | 1.048 | 0.635 | 1.54 | 0.876 | 0.851 | 0.929 | 0.363 | 0.694 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13376
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.933
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
1-21
|
0.995
|
— | — | — | — |
0.000
|
— | — |
0.140
|
0.827
|
0.111
|
0.151
|
0.103
|
0.118
|
0.051
|
0.034
|
0.075
|
0.031
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011335
|
1.000
|
1.000
|
Hsc_gene_8226.t1
|
Hsc_gene_8226.t1
|
— |
P48376.1 5-demethoxyubiquinone hydroxylase, mitochondrial [Caenorhabditis elegans]
|
KAI1715813.1 ubiquinone biosynthesis protein COQ7 domain-containing protein [Ditylenchus destructor]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004497|GO:0006744
|
GO:0008150_0.923|GO:0009987_0.851|GO:0008152_0.786|GO:0005575_0.772|GO:0110165_0.756|GO:0044237_0.753|GO:0044281_0.744|GO:0009058_0.741|GO:0044249_0.724|GO:0044283_0.694|GO:0042180_0.676|GO:0042181_0.676|GO:0006743_0.670|GO:0006744_0.670|GO:1901661_0.670|GO:1901663_0.670|GO:0005622_0.664|GO:0005737_0.663|GO:0016020_0.663|GO:0043226_0.595|GO:0043229_0.585|GO:0043227_0.581|GO:0003674_0.552|GO:0043231_0.549
|
IPR009078+37-180+|IPR011566+1-212_16-212_36-211+
|
— |
PF03232+34-208+Ubiquinone_biosynthesis_protein_COQ7
|
— |
PTHR11237+16-212+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-212
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.523
|
23565.070
|
6.908
|
2.000
|
27.358
|
10.377
|
44.811
|
55.189
|
15.094
|
12.264
|
46.226
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
greenyellow
|
1308.917
|
531.300
|
766.808
|
997.791
|
1471.166
|
1035.200
|
1235.907
|
944.795
|
408.318
|
2801.662
|
1775.943
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.298
|
0.772
|
0.490
|
0.529
|
-0.492
|
0.267
|
— |
0.530
|
-2.897
|
— | — | — | — |
No JSON data available for plots.