Hg_chrom7_TN10mRNA_14175
Organism: Heterodera glycines Gene Locus: chr7:5779513-5783117 Feature type: polypeptideProtein Sequence
Length: 869
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.736 | 0.963 | 0.858 | 1.032 | 1.381 | 1.21 | 0.493 | 1.151 | 1.355 | 1.726 | 0.837 | 1.218 | 1.279 | 0.73 | 1.362 | 0.953 | 0.698 | 0.994 | 0.708 | 0.711 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13377
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.806
|
0.068
|
0.007
|
0.354
|
0.042
|
0.065
|
0.068
|
0.031
|
0.057
|
0.017
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011336
|
1.000
|
1.000
|
Hsc_gene_8227.t1
|
Hsc_gene_8227.t1
|
— |
Q6GN08.1 Condensin-2 complex subunit D3-L [Xenopus laevis]
|
KAI3409873.1 Condensin-2 complex subunit D3 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007076
|
GO:0008150_0.958|GO:0009987_0.915|GO:0005575_0.882|GO:0110165_0.878|GO:0005622_0.815|GO:0016020_0.794|GO:0016043_0.775|GO:0071840_0.775|GO:0043226_0.751|GO:0043229_0.727|GO:0006996_0.717|GO:0043227_0.705|GO:0007049_0.685|GO:0022402_0.685|GO:0048285_0.685|GO:0000280_0.684|GO:0043231_0.677|GO:0005634_0.579|GO:0043228_0.575|GO:0043232_0.575|GO:0031974_0.544|GO:0043233_0.544|GO:0070013_0.542|GO:0031981_0.541|GO:0005694_0.514|GO:0032991_0.506
|
IPR011989+10-323_511-690+|IPR016024+17-667+|IPR026971+80-862+|IPR032682+560-648+
|
— |
PF12717+560-648+non-SMC_mitotic_condensation_complex_subunit_1
|
— |
PTHR14222+80-862+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-8;451-497
|
2.000
|
9-450;498-869
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.510
|
99362.830
|
6.734
|
3.000
|
27.503
|
10.242
|
47.296
|
52.704
|
14.499
|
13.003
|
43.613
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
red
|
468.633
|
180.243
|
146.624
|
635.695
|
1068.921
|
885.298
|
1472.778
|
308.892
|
45.416
|
254.289
|
164.772
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.530
|
1.681
|
2.227
|
0.718
|
-0.257
|
0.746
|
-1.629
|
2.398
|
— | — | — | — | — |
No JSON data available for plots.