Hg_chrom7_TN10mRNA_14176
Organism: Heterodera glycines Gene Locus: chr7:5782410-5784902 Feature type: polypeptideProtein Sequence
Length: 169
(Signal peptide: 1-37)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.826 | 0.688 | 0.538 | 1.224 | 0.888 | 1.365 | 0.986 | 1.479 | 1.052 | 1.439 | 1.166 | 1.74 | 1.479 | 0.797 | 1.328 | 1.099 | 0.582 | 0.717 | 0.91 | 0.696 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13378
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
extracellular
|
— | — |
42-62
|
0.992
|
31-62
|
0.993
|
1-37
|
0.967
|
1.000
|
0.000
|
0.000
|
0.353
|
0.431
|
0.078
|
0.305
|
0.118
|
0.026
|
0.090
|
0.006
|
0.317
|
0.839
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003464
|
2.000
|
1.000
|
Hsc_gene_16541.t1
|
— | — |
Q5WRU0.1 Immunoglobulin domain-containing protein oig-4 [Caenorhabditis elegans]
|
KAI3409887.1 Immunoglobulin domain-containing protein oig-4 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.872|GO:0110165_0.872|GO:0008150_0.668|GO:0009987_0.580|GO:0003674_0.561|GO:0005622_0.536
|
IPR003598+86-158+|IPR003599+80-169+|IPR007110+88-167+|IPR013098+83-161+|IPR013783+74-168+|IPR036179+82-160+|IPR050958+86-159+
|
SM00408+86-158+|SM00409+80-169+
|
PF07679+83-161+Immunoglobulin_I-set_domain
|
G3DSA:2.60.40.10:FF:000032+76-167+palladin_isoform_X1
|
PTHR45080+86-159+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-169
|
4yh7_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.728
|
18979.080
|
9.935
|
12.500
|
25.444
|
11.834
|
44.970
|
55.030
|
17.160
|
8.284
|
44.970
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
lightgreen
|
283.552
|
287.034
|
920.070
|
258.126
|
168.783
|
249.787
|
276.410
|
521.479
|
67.186
|
184.517
|
134.232
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.451
|
-0.291
|
-1.725
|
-0.644
|
0.579
|
— |
0.957
|
-0.772
|
— | — | — | — | — |