SCN Proteipedia

Hg_chrom7_TN10mRNA_14182

Organism: Heterodera glycines Gene Locus: chr7:5793193-5795831 Feature type: polypeptide

Protein Sequence

Length: 485

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.935	1.247	0.45	0.924	1.065	1.903	0.319	2.68	0.641	1.365	0.625	1.577	0.745	1.626	1.094	2.032	0.575	0.437	0.952	0.424	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13383	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	2-pJ2_J3_J4_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RKRR,RRRSEVQVQNEANERHKPR,RRSEVQVQNEANERHKPRK	—	—	—	—	—	—	0.000	—	—	0.897	0.148	0.011	0.350	0.031	0.035	0.027	0.010	0.038	0.015

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011340	1.000	1.000	Hsc_gene_8232.t1	Hsc_gene_8232.t1	—	Q13351.1 Krueppel-like factor 1 [Homo sapiens]	KAI3409892.1 zinc finger protein Klf1 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.938\|GO:0009987_0.905\|GO:0065007_0.894\|GO:0050789_0.890\|GO:0050794_0.830\|GO:0005575_0.791\|GO:0110165_0.791\|GO:0008152_0.765\|GO:0009058_0.765\|GO:0009059_0.765\|GO:0010467_0.765\|GO:0043170_0.765\|GO:0044237_0.765\|GO:0044249_0.765\|GO:0019222_0.763\|GO:0031323_0.763\|GO:0060255_0.758\|GO:0044238_0.756\|GO:0080090_0.756\|GO:0009889_0.748\|GO:0010556_0.748\|GO:0031326_0.748\|GO:0010468_0.746\|GO:0003674_0.745\|GO:0005488_0.745\|GO:0005622_0.743\|GO:0043226_0.736\|GO:0006139_0.735\|GO:0016070_0.735\|GO:0032774_0.735\|GO:0034654_0.735\|GO:0090304_0.735\|GO:0141187_0.735\|GO:0043229_0.724\|GO:0006351_0.718\|GO:0019219_0.712\|GO:0051252_0.712\|GO:0003676_0.701\|GO:0097159_0.701\|GO:0006355_0.697\|GO:2001141_0.697\|GO:0003677_0.680\|GO:0003690_0.680\|GO:0043565_0.680\|GO:1990837_0.680\|GO:0048518_0.601\|GO:0048522_0.595\|GO:0032502_0.593\|GO:0048856_0.593\|GO:0032501_0.588\|GO:0016020_0.580\|GO:0000976_0.572\|GO:0001067_0.572\|GO:0006366_0.569\|GO:0005634_0.559\|GO:0043227_0.559\|GO:0043231_0.559\|GO:0006357_0.547\|GO:0009893_0.541\|GO:0031325_0.533\|GO:0010604_0.524\|GO:0009891_0.522\|GO:0140110_0.518\|GO:0010557_0.516\|GO:0031328_0.516\|GO:0000977_0.502\|GO:0048519_0.502	IPR013087+395-419_395-424_397-419_425-449_425-454_427-449_455-480+\|IPR036236+405-461+	SM00355+395-419_425-449_455-480+	PF00096+395-419_425-449+Zinc_finger,_C2H2_type	G3DSA:3.30.160.60:FF:000007+391-480+Basic_krueppel-like_factor_3	PTHR23235+102-480+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	207-411;475-485	2.000	1-206;412-474	6vtx_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.923	54129.820	7.979	16.000	23.711	10.722	54.227	45.773	14.845	8.866	50.309

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	purple	993.360	391.834	551.999	1894.170	2178.470	1551.406	1550.401	756.913	108.414	936.442	581.573

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.264	2.137	1.888	0.170	-0.477	—	-1.141	1.177	-3.234	4.308	—	—	—

No JSON data available for plots.

Back to Browser