Hg_chrom7_TN10mRNA_14185
Organism: Heterodera glycines Gene Locus: chr7:5806419-5808367 Feature type: polypeptideProtein Sequence
Length: 343
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.746 | 1.559 | 0.848 | 0.201 | 1.701 | 1.121 | 1.076 | 0.437 | 1.101 | 1.024 | 1.458 | 1.372 | 0.891 | 0.561 | 1.071 | 1.541 | 0.86 | 0.53 | 0.673 | 0.257 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13386
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.533
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKRR,KKKLAQEEKKEEDGKEKKS,KKLAQEEKKEEDGKEKKSR
|
— | — |
49-77
|
0.997
|
— | — |
0.000
|
— | — |
0.880
|
0.143
|
0.005
|
0.356
|
0.074
|
0.027
|
0.040
|
0.022
|
0.099
|
0.082
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011343
|
1.000
|
1.000
|
Hsc_gene_8236.t1
|
Hsc_gene_8236.t1
|
— | — |
KAF7636987.1 RanBD1 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046907
|
GO:0005575_0.795|GO:0110165_0.788|GO:0005622_0.776|GO:0008150_0.741|GO:0009987_0.692|GO:0043226_0.677|GO:0043229_0.676|GO:0016020_0.658|GO:0003674_0.637|GO:0043227_0.625|GO:0043231_0.601|GO:0005737_0.580|GO:0005488_0.548|GO:0005515_0.506
|
IPR000156+149-239_155-278_164-239+|IPR011993+46-280+|IPR045255+19-331+
|
SM00160+155-278+
|
PF00638+164-239+RanBP1_domain
|
— |
PTHR23138+19-331+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-175;287-343
|
1.000
|
176-286
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.882
|
37701.040
|
7.253
|
1.500
|
30.612
|
5.831
|
57.726
|
42.274
|
15.743
|
14.869
|
49.854
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1839.073
|
1449.327
|
1159.767
|
1354.004
|
1545.663
|
1401.995
|
1475.055
|
1689.066
|
2516.554
|
2380.452
|
2438.782
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.550
|
-0.235
|
0.332
|
0.159
|
— | — | — | — | — | — | — | — | — |
No JSON data available for plots.