SCN Proteipedia

Hg_chrom7_TN10mRNA_14186

Organism: Heterodera glycines Gene Locus: chr7:5808825-5813009 Feature type: polypeptide

Protein Sequence

Length: 958

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.971	1.165	0.702	0.54	0.626	0.83	0.733	0.992	1.276	1.749	0.585	2.333	1.595	0.703	0.81	1.238	0.89	1.313	0.723	0.737	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13387	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Not_Clustered	0.595

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	lysosome_vacuole	—	—	—	—	—	—	—	—	0.000	—	—	0.090	0.051	0.026	0.217	0.200	0.625	0.361	0.013	0.533	0.020

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011344	1.000	1.000	Hsc_gene_8238.t1	Hsc_gene_8237.t1;Hsc_gene_8238.t1	—	A2BFP5.1 Solute carrier family 12 member 9 [Danio rerio]	KAI1721983.1 amino acid permease domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0006811\|GO:0015377\|GO:0016020\|GO:0022857\|GO:0055085	GO:0008150_0.967\|GO:0009987_0.908\|GO:0005575_0.864\|GO:0006810_0.863\|GO:0051179_0.863\|GO:0051234_0.863\|GO:0110165_0.839\|GO:0003674_0.825\|GO:0016020_0.801\|GO:0055085_0.800\|GO:0006811_0.765\|GO:0005215_0.758\|GO:0022857_0.758\|GO:0034220_0.736\|GO:0071944_0.723\|GO:0098660_0.713\|GO:0015075_0.708\|GO:0005886_0.703\|GO:0006812_0.696\|GO:0098655_0.696\|GO:0015318_0.683\|GO:0008324_0.674\|GO:0006820_0.613\|GO:0015698_0.613\|GO:0098661_0.608\|GO:0006821_0.607\|GO:0098656_0.604\|GO:0030001_0.603\|GO:1902476_0.600\|GO:0098662_0.595\|GO:0022804_0.568\|GO:0022890_0.566\|GO:0046873_0.565\|GO:0015291_0.563\|GO:0008509_0.562\|GO:0015103_0.561\|GO:0022853_0.561\|GO:0015293_0.558\|GO:0015294_0.558\|GO:0015108_0.552\|GO:0015296_0.529\|GO:0015377_0.529	IPR004841+90-579+\|IPR004842+61-952+\|IPR018491+590-678_813-950+	—	PF00324+90-579+Amino_acid_permease\|PF03522+590-678_813-950+Solute_carrier_family_12	G3DSA:1.20.1740.10:FF:000013+73-546+Solute_carrier_family_12_member	PTHR11827+61-952+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-3	1.000	4-958	7d90_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.747	105295.930	7.747	11.500	17.432	11.169	39.770	60.230	9.812	7.620	51.357

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	brown	472.794	800.165	819.598	652.605	640.836	704.959	922.461	500.106	236.098	1.129	101.830

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.194	-0.431	-0.220	—	—	0.398	-0.602	1.026	6.273	—	8.033	—	—

No JSON data available for plots.

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