Hg_chrom7_TN10mRNA_14187
Organism: Heterodera glycines Gene Locus: chr7:5811442-5817164 Feature type: polypeptideProtein Sequence
Length: 563
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.888 | 1.239 | 0.388 | 0.674 | 0.562 | 1.048 | 0.444 | 1.243 | 0.632 | 2.352 | 0.565 | 0.836 | 3.207 | 1.059 | 1.051 | 1.04 | 0.466 | 1.184 | 1.503 | 0.522 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13388
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.102
|
0.088
|
0.022
|
0.105
|
0.947
|
0.211
|
0.484
|
0.010
|
0.186
|
0.028
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011345
|
1.000
|
1.000
|
Hsc_gene_8239.t1
|
Hsc_gene_8239.t1;Hsc_gene_8239.t2
|
— |
Q09226.1 Probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase [Caenorhabditis elegans]
|
KAF7636980.1 Alpha-1,3-glucosyltransferase [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016758
|
GO:0008150_0.915|GO:0005575_0.792|GO:0110165_0.790|GO:0016020_0.770|GO:0009987_0.762|GO:0071944_0.753|GO:0005886_0.750|GO:0005622_0.670|GO:0005737_0.654|GO:0043226_0.645|GO:0005773_0.635|GO:0043227_0.635|GO:0043229_0.635|GO:0043231_0.635|GO:0012505_0.629|GO:0008152_0.595|GO:0003674_0.588|GO:0044238_0.577|GO:0009058_0.575|GO:0044237_0.572|GO:0044249_0.557|GO:0043170_0.556|GO:0019538_0.553|GO:1901135_0.545|GO:0009059_0.541|GO:0070085_0.538|GO:0009100_0.537|GO:0036211_0.537|GO:0043412_0.537|GO:0043413_0.531|GO:1901137_0.531|GO:0006486_0.530|GO:0009101_0.530
|
IPR004856+48-548_62-530+
|
— |
PF03155+62-530+ALG6,_ALG8_glycosyltransferase_family
|
— |
PTHR12413+48-548+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
559-563
|
1.000
|
1-558
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.827
|
64509.100
|
9.996
|
26.000
|
16.874
|
17.762
|
36.412
|
63.588
|
11.368
|
5.506
|
44.227
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
saddlebrown
|
1023.936
|
1319.362
|
1122.441
|
907.912
|
868.736
|
879.042
|
1289.804
|
918.784
|
516.139
|
1352.835
|
994.251
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.465
|
-0.676
|
-0.196
|
— | — |
0.562
|
— |
0.629
|
— | — | — | — | — |
No JSON data available for plots.