Hg_chrom7_TN10mRNA_14188
Organism: Heterodera glycines Gene Locus: chr7:5817699-5818914 Feature type: polypeptideProtein Sequence
Length: 263
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.459 | 0.884 | 0.83 | 0.524 | 0.951 | 0.292 | 1.177 | 0.57 | 1.69 | 1.336 | 0.807 | 1.342 | 0.951 | 0.585 | 1.242 | 1.249 | 0.686 | 0.979 | 0.585 | 0.559 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13389
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
peroxisome
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.377
|
0.389
|
0.198
|
0.322
|
0.086
|
0.256
|
0.122
|
0.509
|
0.134
|
0.179
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011346
|
1.000
|
1.000
|
Hsc_gene_8240.t1
|
Hsc_gene_8240.t1
|
— |
G5EGA6.1 Dehydrogenase/reductase SDR family member 4 [Caenorhabditis elegans]
|
KAH7730821.1 Protein F54F3.4 [Aphelenchus avenae]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0005575_0.698|GO:0110165_0.687|GO:0008150_0.646|GO:0003674_0.641|GO:0005622_0.583|GO:0016020_0.577|GO:0005737_0.547|GO:0009987_0.510|GO:0003824_0.502
|
IPR002347+15-32_92-103_140-156_146-154_166-185_187-204_223-243+|IPR020904+153-181+|IPR036291+12-260+
|
— |
PF13561+21-258+Enoyl-(Acyl_carrier_protein)_reductase
|
G3DSA:3.40.50.720:FF:000084+3-262+Short-chain_dehydrogenase_reductase
|
PTHR43943+9-263+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-263
|
5oji_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.845
|
27890.130
|
8.476
|
4.500
|
22.814
|
7.224
|
40.684
|
59.316
|
12.548
|
10.266
|
54.753
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkgrey
|
857.893
|
327.483
|
392.397
|
822.700
|
814.620
|
770.024
|
1093.884
|
503.193
|
1125.573
|
1137.487
|
1132.381
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.192
|
1.176
|
— | — |
0.518
|
-0.721
|
1.265
|
— | — | — | — | — |
No JSON data available for plots.