Hg_chrom7_TN10mRNA_14189
Organism: Heterodera glycines Gene Locus: chr7:5819082-5822744 Feature type: polypeptideProtein Sequence
Length: 840
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.844 | 1.107 | 1.19 | 0.616 | 1.429 | 1.618 | 0.468 | 0.833 | 1.164 | 1.625 | 0.794 | 1.19 | 1.389 | 0.389 | 1.531 | 1.088 | 0.839 | 0.848 | 0.366 | 0.385 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13390
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.302
|
0.096
|
0.019
|
0.570
|
0.236
|
0.483
|
0.424
|
0.208
|
0.170
|
0.320
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011347
|
1.000
|
1.000
|
Hsc_gene_8241.t1
|
Hsc_gene_8241.t1
|
— |
Q95XZ0.1 Conserved oligomeric Golgi complex subunit 4 [Caenorhabditis elegans]
|
KAF7634353.1 Cog4 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.814|GO:0005575_0.642|GO:0110165_0.638|GO:0009987_0.613|GO:0005622_0.598|GO:0016020_0.573|GO:0043226_0.536|GO:0043229_0.521
|
IPR013167+193-552_222-549+|IPR048680+79-172+|IPR048682+36-833+|IPR048684+590-790+
|
SM00762+193-552+
|
PF08318+222-549+COG4_transport_protein,_middle_alpha-helical_bundle|PF20662+590-790+Conserved_oligomeric_Golgi_complex_subunit_4,_C-terminal|PF20663+79-172+Conserved_oligomeric_Golgi_complex_subunit_4,_N-terminal
|
— |
PTHR24016+36-833+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-28
|
1.000
|
29-840
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.615
|
95754.670
|
5.272
|
-13.000
|
29.524
|
8.452
|
53.333
|
46.667
|
14.405
|
15.119
|
44.643
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
2037.036
|
1554.653
|
1423.991
|
1343.741
|
1591.991
|
1703.855
|
1960.869
|
1735.043
|
1936.646
|
3216.746
|
2668.132
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.356
|
-0.347
|
— |
0.212
|
— |
0.213
|
— |
0.319
|
— | — | — | — |
-3.509
|
No JSON data available for plots.