Hg_chrom7_TN10mRNA_14190
Organism: Heterodera glycines Gene Locus: chr7:5823007-5824718 Feature type: polypeptideProtein Sequence
Length: 409
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.995 | 1.08 | 1.156 | 0.843 | 1.222 | 1.254 | 0.786 | 1.467 | 0.815 | 1.256 | 0.815 | 1.007 | 1.222 | 0.658 | 1.697 | 0.838 | 0.561 | 0.926 | 1.881 | 0.647 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13391
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.633
|
0.146
|
0.012
|
0.647
|
0.226
|
0.041
|
0.088
|
0.105
|
0.138
|
0.098
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011348
|
1.000
|
1.000
|
Hsc_gene_8242.t1
|
Hsc_gene_8242.t1
|
— |
Q9TW67.1 Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase [Caenorhabditis elegans]
|
KAI1731099.1 thioredoxin domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.862|GO:0005575_0.821|GO:0110165_0.808|GO:0005622_0.735|GO:0003674_0.723|GO:0005737_0.630|GO:0009987_0.623|GO:0003824_0.597
|
IPR013766+8-100+|IPR018325+268-351+|IPR036249+3-103+|IPR038765+132-376+|IPR050883+176-406+
|
— |
PF00085+8-100+Thioredoxin|PF03835+268-351+Rad4_transglutaminase-like_domain
|
G3DSA:2.20.25.10:FF:000011+195-243+peptide-N(4)-(N-acetyl-beta-_glucosaminyl)asparagine_amidase
|
PTHR12143+176-406+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
387-409
|
1.000
|
1-386
|
2f4o_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.638
|
46688.800
|
7.432
|
6.000
|
30.318
|
11.980
|
49.144
|
50.856
|
16.626
|
13.692
|
47.433
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
darkgrey
|
2378.657
|
1094.641
|
1037.887
|
1095.991
|
1557.852
|
2255.461
|
1709.532
|
2299.101
|
1189.061
|
5370.902
|
3578.684
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.305
|
-0.135
|
0.186
|
0.475
|
0.549
|
-0.390
|
— |
-0.284
|
— | — | — | — | — |
No JSON data available for plots.