SCN Proteipedia

Hg_chrom7_TN10mRNA_14192

Organism: Heterodera glycines Gene Locus: chr7:5827563-5833482 Feature type: polypeptide

Protein Sequence

Length: 1,046

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.878	0.889	1.199	0.527	1.052	1.005	0.751	1.96	0.807	1.447	0.478	2.137	1.806	0.919	1.444	0.888	0.69	1.014	0.735	0.731	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13393	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	23-Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	extracellular	—	—	—	—	—	—	—	—	0.291	—	—	0.390	0.366	0.036	0.427	0.287	0.290	0.178	0.173	0.298	0.494

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011350	1.000	1.000	Hsc_gene_8244.t1	Hsc_gene_8244.t1;Hsc_gene_8244.t2;Hsc_gene_8244.t3	—	Q6GQB9.2 ER degradation-enhancing alpha-mannosidase-like protein 3 [Xenopus laevis]	KAH7729181.1 ER degradation-enhancing alpha-mannosidase-like 3-like protein [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004571\|GO:0005509\|GO:0005975\|GO:0016020\|GO:1904380\|GO:1904382	GO:0008150_0.864\|GO:0005575_0.856\|GO:0110165_0.855\|GO:0003674_0.784\|GO:0005622_0.772\|GO:0005737_0.736\|GO:0016020_0.723\|GO:0008152_0.706\|GO:0003824_0.704\|GO:0044238_0.680\|GO:0009987_0.670\|GO:0071944_0.659\|GO:0043226_0.649\|GO:0005886_0.643\|GO:0043227_0.642\|GO:0043170_0.640\|GO:0043229_0.634\|GO:0019538_0.623\|GO:0043231_0.616\|GO:0016787_0.596\|GO:0050896_0.578\|GO:0004553_0.552\|GO:0016798_0.552\|GO:0004559_0.544\|GO:0015923_0.544\|GO:0005773_0.538\|GO:0012505_0.532\|GO:0051716_0.525\|GO:1901135_0.523\|GO:0009100_0.502\|GO:0042221_0.502	IPR001382+74-94_75-511_119-133_156-174_209-228_303-320_361-377_415-439_474-494+\|IPR003137+733-833+\|IPR012341+59-521+\|IPR036026+67-512+\|IPR044674+61-811+\|IPR046450+753-807+	—	PF01532+75-511+Glycosyl_hydrolase_family_47\|PF02225+733-833+PA_domain	—	PTHR45679+61-811+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-1046	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.528	118715.310	6.202	-7.500	27.055	13.862	45.220	54.780	14.149	12.906	47.706

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	tan	2193.505	1872.140	2370.671	2103.545	1969.404	2441.692	3630.456	2487.617	3061.547	972.104	1867.580

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.112	—	—	-0.127	0.325	0.583	—	0.688	—	—	—	—	—

No JSON data available for plots.

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