Hg_chrom7_TN10mRNA_14193
Organism: Heterodera glycines Gene Locus: chr7:5834133-5836176 Feature type: polypeptideProtein Sequence
Length: 417
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.088 | 1.394 | 1.003 | 0.496 | 0.639 | 1.291 | 0.885 | 1.799 | 1.226 | 0.907 | 0.327 | 0.705 | 1.332 | 0.876 | 0.979 | 1.61 | 1.14 | 1.199 | 1.107 | 0.141 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13394
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.509
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.001
|
— | — |
0.612
|
0.293
|
0.008
|
0.406
|
0.108
|
0.407
|
0.145
|
0.047
|
0.089
|
0.045
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011351
|
1.000
|
1.000
|
Hsc_gene_8245.t1
|
Hsc_gene_8245.t1
|
— | — |
KAI1725717.1 nucleoporin Nup43 [Ditylenchus destructor]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.873|GO:0110165_0.867|GO:0016020_0.782|GO:0005622_0.781|GO:0005737_0.736|GO:0043226_0.712|GO:0043229_0.708|GO:0043227_0.701|GO:0071944_0.701|GO:0043231_0.699|GO:0005886_0.668|GO:0005634_0.604|GO:0005829_0.597|GO:0032991_0.596|GO:0005773_0.595|GO:0012505_0.580|GO:0031974_0.561|GO:0043233_0.561|GO:0070013_0.561|GO:0031967_0.558|GO:0031981_0.555|GO:0005654_0.552|GO:0140513_0.551|GO:0005635_0.540|GO:0005643_0.540|GO:0016604_0.540|GO:0016607_0.540|GO:0031080_0.540
|
IPR001680+183-221_242-282_287-326+|IPR015943+27-413+|IPR036322+33-325+
|
SM00320+183-221_242-282_287-326+
|
— | — |
PTHR22652+27-411+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-24
|
1.000
|
25-417
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.770
|
44723.760
|
6.219
|
-2.500
|
19.904
|
10.312
|
49.161
|
50.839
|
10.552
|
9.353
|
60.432
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
saddlebrown
|
1669.965
|
2040.320
|
1247.436
|
1544.620
|
1614.997
|
1252.552
|
2061.400
|
1328.003
|
817.227
|
2534.677
|
1798.627
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.940
|
-0.539
|
0.417
|
— |
-0.352
|
0.730
|
— |
0.779
|
— | — | — | — | — |
No JSON data available for plots.