Hg_chrom7_TN10mRNA_14197
Organism: Heterodera glycines Gene Locus: chr7:5843925-5846270 Feature type: polypeptideProtein Sequence
Length: 359
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.713 | 0.972 | 0.709 | 1.345 | 1.253 | 1.214 | 0.531 | 2.228 | 1.052 | 0.941 | 0.717 | 0.328 | 1.934 | 1.018 | 1.478 | 1.433 | 1.005 | 0.886 | 0.214 | 0.573 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13397
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.937
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRPIFTCPECRRRFD
|
— | — | — | — | — | — |
0.072
|
— | — |
0.818
|
0.138
|
0.029
|
0.315
|
0.022
|
0.025
|
0.042
|
0.054
|
0.039
|
0.047
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004593
|
1.000
|
2.000
|
Hsc_gene_8247.t1;Hsc_gene_8247.t2
|
Hsc_gene_8247.t1
|
— |
P28166.2 Zinc finger protein 1 [Drosophila melanogaster]
|
XP_020304962.1 MED7 protein [Loa loa];EJD74020.1 MED7 protein [Loa loa]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.939|GO:0050789_0.924|GO:0065007_0.924|GO:0009987_0.910|GO:0050794_0.910|GO:0005575_0.880|GO:0110165_0.868|GO:0005622_0.858|GO:0008152_0.858|GO:0043170_0.858|GO:0019222_0.853|GO:0031323_0.853|GO:0044237_0.853|GO:0009058_0.850|GO:0009059_0.850|GO:0044238_0.850|GO:0044249_0.850|GO:0080090_0.850|GO:0010467_0.846|GO:0060255_0.845|GO:0006139_0.834|GO:0009889_0.829|GO:0031326_0.829|GO:0010556_0.826|GO:0034654_0.826|GO:0043226_0.826|GO:0016070_0.823|GO:0032774_0.823|GO:0090304_0.823|GO:0141187_0.823|GO:0010468_0.821|GO:0043229_0.821|GO:0016020_0.812|GO:0019219_0.801|GO:0006351_0.798|GO:0051252_0.796|GO:0006355_0.791|GO:2001141_0.791|GO:0043227_0.788|GO:0043231_0.767|GO:0005634_0.765|GO:0006357_0.742|GO:0006366_0.742|GO:0048519_0.706|GO:0048523_0.685|GO:0003674_0.660|GO:0005488_0.646|GO:0009892_0.643|GO:0010605_0.633|GO:0031324_0.633|GO:0009890_0.624|GO:0010558_0.624|GO:0031327_0.624|GO:0045934_0.621|GO:0051253_0.621|GO:0032501_0.619|GO:0045892_0.616|GO:1902679_0.616|GO:0000122_0.604|GO:0032502_0.601|GO:0048856_0.601|GO:0097159_0.592|GO:0048518_0.584|GO:0007275_0.579|GO:0048522_0.578|GO:0003676_0.564|GO:0048731_0.562|GO:0030154_0.559|GO:0048869_0.559|GO:0003677_0.537|GO:0043565_0.537|GO:0003690_0.531|GO:1990837_0.531|GO:0050793_0.509|GO:0043228_0.504|GO:0043232_0.504|GO:0009653_0.503|GO:0001067_0.502
|
IPR013087+121-139_121-141_121-151_246-267_246-272_273-295_273-300_275-295_301-324_303-324+|IPR036236+247-275_267-319+
|
SM00355+121-141_246-267_273-295_301-324+
|
PF00096+121-139+Zinc_finger,_C2H2_type
|
G3DSA:3.30.160.60:FF:000130+296-324+Spalt-like_transcription_factor_4|G3DSA:3.30.160.60:FF:000870+269-295+zinc_finger_protein_197_isoform_X1
|
PTHR24390+77-322+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-359
|
2rpc_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.780
|
40668.820
|
7.759
|
10.000
|
27.855
|
13.649
|
52.925
|
47.075
|
16.435
|
11.421
|
49.861
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
550.219
|
996.345
|
755.600
|
621.579
|
572.080
|
502.113
|
660.240
|
826.663
|
372.880
|
277.065
|
318.129
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.629
|
-0.818
|
-0.173
|
-0.151
|
— |
0.404
|
0.613
|
— | — | — | — | — | — |
No JSON data available for plots.