Hg_chrom7_TN10mRNA_14198
Organism: Heterodera glycines Gene Locus: chr7:5846437-5847620 Feature type: polypeptideProtein Sequence
Length: 250
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.698 | 1.581 | 1.018 | 0.552 | 1.267 | 1.026 | 0.381 | 0.8 | 1.244 | 1.568 | 1.333 | 1.176 | 1.333 | 0.692 | 1.306 | 0.629 | 0.656 | 1.091 | 0.615 | 1.294 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13398
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.604
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.565
|
0.149
|
0.022
|
0.539
|
0.164
|
0.271
|
0.209
|
0.005
|
0.064
|
0.055
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011353
|
1.000
|
1.000
|
Hsc_gene_8248.t1
|
Hsc_gene_8248.t1
|
— |
A8QDN3.1 Eukaryotic translation initiation factor 3 subunit K [Brugia malayi]
|
KAF7632551.1 Eukaryotic translation initiation factor 3 subunit K [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003743|GO:0005737|GO:0005852|GO:0006446|GO:0043022
|
GO:0008150_0.932|GO:0005575_0.895|GO:0110165_0.893|GO:0009987_0.877|GO:0005622_0.858|GO:0005737_0.809
|
IPR000717+52-236+|IPR009374+15-250_25-248+|IPR016020+15-130+|IPR016024+25-135+|IPR033464+72-230+|IPR036388+150-250+|IPR036390+160-248+
|
— |
PF10075+72-230+CSN8/PSMD8/EIF3K_family
|
G3DSA:1.10.10.10:FF:000212+150-250+Eukaryotic_translation_initiation_factor_3_subunit_K
|
PTHR13022+25-248+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-250
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.683
|
29188.720
|
8.964
|
7.000
|
30.000
|
11.600
|
49.200
|
50.800
|
16.800
|
13.200
|
42.400
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
yellow
|
1435.413
|
1084.565
|
1144.279
|
1679.323
|
1766.875
|
1455.667
|
1450.468
|
1264.333
|
1529.454
|
1440.774
|
1478.780
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.152
|
0.493
|
0.662
|
— |
-0.265
|
— |
-0.309
|
0.341
|
— | — | — | — | — |
No JSON data available for plots.