SCN Proteipedia

Hg_chrom7_TN10mRNA_14199

Organism: Heterodera glycines Gene Locus: chr7:5847851-5853961 Feature type: polypeptide

Protein Sequence

Length: 1,302

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.759	1.09	0.852	0.795	1.216	1.063	0.512	0.922	1.092	1.598	0.908	1.31	1.429	0.65	1.332	1.317	1.007	0.78	0.65	0.836	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13399	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	11-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRSR	—	—	—	—	—	—	0.000	—	—	0.782	0.052	0.006	0.337	0.032	0.063	0.082	0.044	0.038	0.089

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011354	1.000	1.000	Hsc_gene_8249.t1	Hsc_gene_8249.t1;Hsc_gene_8249.t2	—	B1AZI6.1 THO complex subunit 2 [Mus musculus]	KAI1732320.1 transcription factor/nuclear export subunit protein 2 domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	GO:0000347\|GO:0006397\|GO:0006406	GO:0008150_0.967\|GO:0005575_0.939\|GO:0110165_0.939\|GO:0009987_0.927\|GO:0005622_0.862\|GO:0016020_0.857\|GO:0043226_0.806\|GO:0043229_0.796\|GO:0051179_0.781\|GO:0008152_0.769\|GO:0043170_0.769\|GO:0006810_0.764\|GO:0051234_0.764\|GO:0009058_0.750\|GO:0044237_0.749\|GO:0009059_0.741\|GO:0044249_0.741\|GO:0043227_0.740\|GO:0010467_0.726\|GO:0043231_0.716\|GO:0033036_0.699\|GO:0071705_0.689\|GO:0006403_0.670\|GO:0015931_0.670\|GO:0050657_0.670\|GO:0050658_0.670\|GO:0051236_0.670\|GO:0005634_0.634\|GO:0065007_0.599\|GO:0050789_0.584\|GO:0051641_0.583\|GO:0003674_0.568\|GO:0050794_0.563\|GO:0051649_0.563\|GO:0046907_0.548\|GO:0032501_0.542\|GO:0006405_0.531\|GO:0006406_0.531\|GO:0006913_0.531\|GO:0051028_0.531\|GO:0051168_0.531\|GO:0051169_0.531\|GO:0005488_0.523\|GO:0032502_0.523\|GO:0048856_0.523	IPR021418+895-1201+\|IPR021726+582-657+\|IPR032302+16-408_456-580+\|IPR040007+25-1295+	—	PF11262+895-1201+Transcription_factor/nuclear_export_subunit_protein_2\|PF11732+582-657+Transcription-_and_export-related_complex_subunit\|PF16134+16-408_456-580+THO_complex_subunit_2_N-terminus	—	PTHR21597+25-1295+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-13;1215-1302	1.000	14-1214	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.708	147952.290	7.959	19.000	26.344	10.676	50.538	49.462	14.363	11.982	46.390

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	darkturquoise	2219.142	2219.706	1694.150	2792.709	3223.851	2457.057	3232.701	1706.391	2495.937	1339.331	1835.019

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.620	0.194	0.830	0.175	-0.377	0.406	-0.632	1.064	—	—	—	—	—

No JSON data available for plots.

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