Hg_chrom7_TN10mRNA_14201
Organism: Heterodera glycines Gene Locus: chr7:5862943-5866513 Feature type: polypeptideProtein Sequence
Length: 789
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.752 | 0.914 | 1.36 | 0.219 | 1.584 | 0.942 | 0.845 | 1.204 | 0.929 | 0.976 | 0.807 | 0.969 | 1.338 | 1.072 | 1.888 | 1.032 | 0.727 | 0.922 | 0.585 | 0.671 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13401
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.684
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RDLKRRI,RRADFAANGTMKRSFR,KRCTPLSERDLQKLDKK,RRDVNIREIYWALRRAKL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.896
|
0.080
|
0.013
|
0.380
|
0.087
|
0.048
|
0.092
|
0.014
|
0.050
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004594
|
2.000
|
1.000
|
Hsc_gene_8251.t1
|
Hsc_gene_8251.t1
|
— |
Q966L5.1 Serrate RNA effector molecule homolog [Caenorhabditis elegans]
|
KAH7727903.1 arsenite-resistance protein 2 containing protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006397
|
GO:0008150_0.950|GO:0005575_0.913|GO:0110165_0.911|GO:0009987_0.884|GO:0005622_0.846|GO:0065007_0.835|GO:0050789_0.825|GO:0016020_0.811|GO:0050794_0.803|GO:0008152_0.793|GO:0043226_0.785|GO:0044238_0.780|GO:0043170_0.770|GO:0044237_0.766|GO:0043229_0.765|GO:0009058_0.762|GO:0044249_0.753|GO:0009059_0.744|GO:0010467_0.744|GO:0006139_0.735|GO:0019222_0.731|GO:0048519_0.727|GO:0031323_0.726|GO:0034654_0.724|GO:0090304_0.723|GO:0060255_0.721|GO:0043227_0.719|GO:0048523_0.719|GO:0016070_0.716|GO:0032774_0.713|GO:0141187_0.713|GO:0009889_0.712|GO:0031326_0.711|GO:0010468_0.709|GO:0010556_0.709|GO:0043231_0.699|GO:0009892_0.694|GO:0010605_0.692|GO:0031324_0.691|GO:0006396_0.687|GO:0009890_0.687|GO:0010558_0.687|GO:0031327_0.687|GO:0010629_0.680|GO:0031047_0.670|GO:0031053_0.670|GO:0035196_0.670|GO:0070918_0.670|GO:0032991_0.654|GO:0005634_0.648|GO:0003674_0.521|GO:1990904_0.508
|
IPR007042+562-729+|IPR021933+96-205+|IPR039727+9-786+
|
— |
PF04959+562-729+Arsenite-resistance_protein_2|PF12066+96-205+SERRATE/Ars2,_N-terminal_domain
|
— |
PTHR13165+9-786+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-79;212-302;653-789
|
2.000
|
80-211;303-652
|
6f8d_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.590
|
89541.860
|
5.712
|
-9.500
|
33.967
|
10.266
|
53.232
|
46.768
|
16.984
|
16.984
|
48.923
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
lightcyan
|
1957.169
|
2035.559
|
1758.555
|
2109.910
|
2476.445
|
1883.857
|
2252.186
|
1391.720
|
1724.878
|
2053.368
|
1912.586
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.441
|
-0.085
|
0.372
|
0.199
|
-0.380
|
0.269
|
-0.541
|
0.837
|
— | — | — | — | — |
No JSON data available for plots.