Hg_chrom7_TN10mRNA_14202
Organism: Heterodera glycines Gene Locus: chr7:5868175-5869872 Feature type: polypeptideProtein Sequence
Length: 352
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.628 | 0.661 | 0.671 | 0.49 | 0.663 | 0.947 | 0.913 | 1.42 | 0.821 | 0.537 | 0.603 | 4.178 | 1.342 | 3.551 | 1.565 | 1.096 | 1.164 | 0.517 | 0.437 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13402
|
— | — |
1.222
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.963
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKGGGRGGGAGSKRKAG,RKFVSDICDEIERRKRMG,RGGGTGRKGGGRGGGAGSKRK
|
— | — |
47-107
|
0.973
|
— | — |
0.000
|
— | — |
0.909
|
0.082
|
0.023
|
0.265
|
0.072
|
0.034
|
0.015
|
0.003
|
0.056
|
0.091
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003856
|
3.000
|
0.000
|
0.000
|
— | — | — | — |
MDX2367805
|
0.390
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-284
|
1.000
|
285-352
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.978
|
38508.490
|
10.853
|
19.000
|
22.159
|
8.239
|
43.466
|
56.534
|
14.489
|
7.670
|
57.670
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
red
|
147.761
|
22.313
|
41.428
|
84.929
|
123.653
|
58.376
|
101.743
|
33.103
|
2.410
|
470.067
|
269.642
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.664
|
1.789
|
1.141
|
0.512
|
-1.069
|
0.812
|
-0.930
|
1.764
|
— |
5.387
|
— | — | — |
No JSON data available for plots.