Hg_chrom7_TN10mRNA_14204
Organism: Heterodera glycines Gene Locus: chr7:5873093-5875018 Feature type: polypeptideProtein Sequence
Length: 473
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.762 | 1.18 | 0.923 | 0.875 | 1.198 | 0.813 | 0.755 | 1.48 | 1.222 | 1.114 | 0.673 | 0.995 | 2.408 | 0.894 | 1.51 | 0.906 | 0.832 | 0.993 | 0.976 | 0.373 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13404
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
73-93
|
0.983
|
— | — | — | — |
0.000
|
— | — |
0.190
|
0.954
|
0.011
|
0.180
|
0.025
|
0.020
|
0.035
|
0.009
|
0.037
|
0.008
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011356
|
1.000
|
1.000
|
Hsc_gene_8252.t1
|
Hsc_gene_8252.t1
|
— |
B0JN99.1 Asparagine--tRNA ligase [Microcystis aeruginosa NIES-843]
|
KAF7640001.1 AA_TRNA_LIGASE_II domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000166|GO:0004812|GO:0005524|GO:0006418
|
GO:0005575_0.843|GO:0110165_0.838|GO:0005622_0.765|GO:0005737_0.723|GO:0008150_0.624|GO:0016020_0.595|GO:0043226_0.547|GO:0043227_0.511|GO:0043229_0.504
|
IPR004364+130-466+|IPR006195+143-465+|IPR012340+26-112_26-116+|IPR045864+121-473_122-468+
|
— |
PF00152+130-466+tRNA_synthetases_class_II_(D,_K_and_N)
|
— |
PTHR22594+34-471+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-473
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.675
|
53845.400
|
7.116
|
5.000
|
27.061
|
14.165
|
46.723
|
53.277
|
14.799
|
12.262
|
48.203
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
midnightblue
|
939.044
|
1431.965
|
1175.893
|
1299.015
|
1334.200
|
1013.663
|
1071.179
|
878.419
|
866.343
|
381.933
|
589.538
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.514
|
-0.278
|
0.252
|
— |
-0.382
|
— |
-0.312
|
0.428
|
— | — | — | — | — |
No JSON data available for plots.