Hg_chrom7_TN10mRNA_14206
Organism: Heterodera glycines Gene Locus: chr7:5883179-5895056 Feature type: polypeptideProtein Sequence
Length: 1,218
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.869 | 1.012 | 0.806 | 0.651 | 1.04 | 1.453 | 0.821 | 1.929 | 0.62 | 1.376 | 0.697 | 0.58 | 0.958 | 1.153 | 1.542 | 1.536 | 0.915 | 0.871 | 0.568 | 0.241 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13406
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RPRR
|
14-47
|
0.994
|
29-59
|
0.998
|
— | — |
0.000
|
— | — |
0.230
|
0.154
|
0.053
|
0.691
|
0.159
|
0.283
|
0.223
|
0.056
|
0.514
|
0.052
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011358
|
1.000
|
1.000
|
Hsc_gene_8254.t1
|
Hsc_gene_8254.t1
|
— |
Q9P2F6.2 Rho GTPase-activating protein 20 [Homo sapiens]
|
KAI1722087.1 rhoGAP domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007165
|
GO:0008150_0.909|GO:0005575_0.830|GO:0110165_0.827|GO:0009987_0.811|GO:0065007_0.747|GO:0005622_0.717|GO:0050789_0.710|GO:0050794_0.693|GO:0050896_0.639|GO:0003674_0.597|GO:0005488_0.564|GO:0051716_0.558|GO:0005515_0.525|GO:0023052_0.522|GO:0007154_0.521|GO:0007165_0.506
|
IPR000198+483-668_496-665_499-643+|IPR001849+175-269_176-271+|IPR008936+456-669_488-660+|IPR011993+157-288+
|
SM00233+176-271+|SM00324+496-665+
|
PF00620+499-643+RhoGAP_domain|PF22286+177-262+Rho_GTPase-activating_protein_20,_PH_domain
|
— |
PTHR23179+160-892+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-174;425-495;680-980;1192-1218
|
3.000
|
175-424;496-679;981-1191
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.907
|
133813.240
|
8.863
|
41.500
|
26.683
|
8.867
|
53.038
|
46.962
|
16.010
|
10.673
|
53.120
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
darkgrey
|
1700.561
|
2489.175
|
1098.098
|
976.683
|
1507.380
|
1978.315
|
2570.628
|
1602.342
|
403.638
|
2553.744
|
1632.270
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.410
|
-1.487
|
— |
0.595
|
0.407
|
0.388
|
— |
0.822
|
-2.782
|
— | — | — | — |
No JSON data available for plots.