Hg_chrom7_TN10mRNA_14211
Organism: Heterodera glycines Gene Locus: chr7:5910232-5912015 Feature type: polypeptideProtein Sequence
Length: 369
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.103 | 0.756 | 0.394 | 0.561 | 1.039 | 1.112 | 0.871 | 0.949 | 0.964 | 1.575 | 0.534 | 1.435 | 1.807 | 0.886 | 1.549 | 1.123 | 0.711 | 1.068 | 0.834 | 0.797 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13411
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.778
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
33-53
|
0.996
|
— | — | — | — |
0.000
|
— | — |
0.113
|
0.377
|
0.043
|
0.240
|
0.802
|
0.268
|
0.281
|
0.013
|
0.213
|
0.146
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011361
|
1.000
|
1.000
|
Hsc_gene_8258.t1
|
Hsc_gene_8258.t1
|
— |
Q4R5G7.1 Very-long-chain 3-oxoacyl-CoA reductase [Macaca fascicularis]
|
KAH7712678.1 Protein DHS-5 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.820|GO:0110165_0.812|GO:0008150_0.751|GO:0016020_0.722|GO:0003674_0.694|GO:0005622_0.680|GO:0043226_0.636|GO:0005737_0.628|GO:0009987_0.626|GO:0043229_0.614|GO:0043227_0.596|GO:0043231_0.571|GO:0071944_0.521|GO:0008152_0.515|GO:0003824_0.508
|
IPR002347+66-83_66-254_144-155_192-208_218-237_237-254+|IPR036291+62-274+|IPR051019+31-327+
|
— |
PF00106+66-254+short_chain_dehydrogenase
|
— |
PTHR43899+31-327+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
324-369
|
1.000
|
1-323
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.858
|
41111.580
|
9.635
|
13.500
|
21.409
|
12.195
|
41.192
|
58.808
|
13.008
|
8.401
|
47.696
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
966.702
|
3382.666
|
716.028
|
987.241
|
1463.071
|
1839.358
|
360.090
|
640.770
|
56.144
|
666.254
|
404.778
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.470
|
-1.914
|
0.572
|
0.535
|
0.346
|
-2.342
|
-1.630
|
-0.687
|
-3.707
|
4.327
|
— | — | — |
No JSON data available for plots.