Hg_chrom7_TN10mRNA_14213
Organism: Heterodera glycines Gene Locus: chr7:5916757-5919433 Feature type: polypeptideProtein Sequence
Length: 512
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.954 | 0.681 | 1.101 | 0.404 | 1.465 | 0.901 | 0.698 | 0.879 | 0.955 | 0.897 | 1.125 | 0.574 | 1.411 | 1.277 | 0.917 | 1.06 | 1.377 | 1.272 | 0.3 | 0.46 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13413
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.574
|
0.088
|
0.008
|
0.614
|
0.153
|
0.131
|
0.071
|
0.015
|
0.089
|
0.058
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011363
|
1.000
|
1.000
|
Hsc_gene_8260.t1
|
Hsc_gene_8260.t1
|
— |
P48820.2 E3 SUMO-protein ligase RanBP2 [Bos taurus]
|
KAI3409796.1 Nuclear pore complex protein Nup98-Nup96 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046907
|
GO:0005575_0.920|GO:0110165_0.919|GO:0005622_0.853|GO:0008150_0.838|GO:0009987_0.782|GO:0005737_0.662|GO:0043226_0.647|GO:0016020_0.631|GO:0043229_0.622|GO:0003674_0.552|GO:0043227_0.544|GO:0043231_0.530
|
IPR000156+375-512_376-507_387-509+|IPR011993+359-512+|IPR045255+246-510+
|
SM00160+376-507+
|
PF00638+387-509+RanBP1_domain
|
— |
PTHR23138+246-510+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
330-388
|
2.000
|
1-329;389-512
|
7r5k_04
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.511
|
56145.240
|
5.072
|
-10.500
|
28.516
|
8.789
|
50.781
|
49.219
|
13.672
|
14.844
|
55.078
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
yellow
|
3970.820
|
2207.883
|
2785.933
|
5749.053
|
6927.758
|
4541.326
|
5574.502
|
2390.630
|
2836.544
|
3928.525
|
3460.533
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.106
|
1.244
|
1.154
|
0.237
|
-0.594
|
0.307
|
-1.030
|
1.364
|
— | — | — | — | — |
No JSON data available for plots.