Hg_chrom7_TN10mRNA_14216
Organism: Heterodera glycines Gene Locus: chr7:5926627-5927954 Feature type: polypeptideProtein Sequence
Length: 225
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.982 | 1.137 | 0.727 | 0.613 | 1.259 | 1.254 | 0.212 | 1.556 | 1.679 | 1.502 | 0.808 | 1.569 | 1.358 | 0.684 | 1.361 | 1.079 | 0.801 | 0.808 | 0.684 | 0.915 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13416
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm
|
— |
KRKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.449
|
0.290
|
0.019
|
0.608
|
0.114
|
0.256
|
0.331
|
0.039
|
0.364
|
0.075
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011365
|
1.000
|
1.000
|
Hsc_gene_8263.t1
|
Hsc_gene_8263.t1;Hsc_gene_8263.t2
|
— |
Q17958.2 Programmed cell death protein 10 homolog [Caenorhabditis elegans]
|
KAI1718558.1 programmed cell death protein 10 like protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.931|GO:0032501_0.615|GO:0032502_0.593|GO:0048856_0.593|GO:0007275_0.580|GO:0005575_0.575|GO:0110165_0.569|GO:0009653_0.547|GO:0035295_0.536|GO:0035239_0.535|GO:0005622_0.526
|
IPR009652+9-216+|IPR053750+8-220+
|
— |
PF06840+82-164+Programmed_cell_death_protein_10,_C-terminal
|
— |
PTHR13250+9-216+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-225
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.567
|
25977.970
|
7.785
|
4.500
|
26.667
|
12.000
|
48.889
|
51.111
|
15.111
|
11.556
|
42.222
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
yellow
|
1023.365
|
728.662
|
657.939
|
1006.898
|
1075.631
|
887.198
|
640.692
|
649.460
|
543.817
|
1951.928
|
1348.452
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.377
|
0.330
|
0.723
|
— |
-0.263
|
-0.463
|
-0.552
|
— | — | — | — | — | — |
No JSON data available for plots.