Hg_chrom7_TN10mRNA_14217
Organism: Heterodera glycines Gene Locus: chr7:5928029-5929523 Feature type: polypeptideProtein Sequence
Length: 133
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.612 | 0.874 | 0.547 | 0.259 | 0.752 | 1.542 | 1.164 | 0.752 | 0.334 | 1.016 | 2.165 | 0.885 | 1.044 | 0.289 | 2.455 | 0.43 | 0.616 | 1.937 | 0.0 | 1.106 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13417
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KVEKGGRKQRKERKNRQKKVRGVKKVKVQAGKK
|
12-37
|
0.977
|
— | — | — | — |
0.000
|
— | — |
0.465
|
0.128
|
0.065
|
0.637
|
0.215
|
0.042
|
0.155
|
0.003
|
0.091
|
0.092
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011366
|
1.000
|
1.000
|
Hsc_gene_8264.t1
|
Hsc_gene_8264.t1
|
— |
O42387.1 Small ribosomal subunit protein eS24 [Takifugu rubripes]
|
KAI3409792.1 ribosomal 40S subunit protein S24B [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.934|GO:0110165_0.927|GO:0005622_0.881|GO:0005737_0.787|GO:0043226_0.760|GO:0043229_0.752|GO:0005829_0.657|GO:0005840_0.582|GO:0016020_0.582|GO:0043228_0.582|GO:0043232_0.582|GO:0022626_0.570|GO:0043227_0.558|GO:0003674_0.551|GO:0043231_0.543|GO:0032991_0.529|GO:1990904_0.529|GO:0044391_0.524|GO:0008150_0.517
|
IPR001976+5-107_7-132_26-103+|IPR012678+8-106+|IPR018098+66-88+|IPR053709+4-133+
|
— |
PF01282+26-103+Ribosomal_protein_S24e
|
G3DSA:3.30.70.3370:FF:000001+3-133+40S_ribosomal_protein_S24
|
PTHR10496+7-132+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
98-133
|
1.000
|
1-97
|
9cai_AY
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.979
|
15304.970
|
11.596
|
26.000
|
35.338
|
9.023
|
51.880
|
48.120
|
27.820
|
7.519
|
43.609
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
green
|
10398.624
|
6232.049
|
6745.691
|
10306.539
|
9528.600
|
7738.669
|
5280.925
|
3762.089
|
22720.751
|
9855.457
|
15369.155
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.115
|
0.589
|
0.720
|
-0.146
|
-0.285
|
-0.540
|
-1.149
|
0.634
|
1.093
|
— | — | — | — |
No JSON data available for plots.