Hg_chrom7_TN10mRNA_14220
Organism: Heterodera glycines Gene Locus: chr7:5940285-5941774 Feature type: polypeptideProtein Sequence
Length: 304
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.994 | 0.382 | 0.239 | 0.681 | 0.877 | 0.928 | 1.253 | 1.48 | 1.17 | 1.378 | 0.598 | 1.354 | 1.553 | 1.012 | 1.41 | 0.846 | 0.971 | 1.196 | 1.265 | 0.967 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13420
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.841
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.152
|
0.892
|
0.032
|
0.132
|
0.110
|
0.218
|
0.254
|
0.072
|
0.100
|
0.070
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011369
|
1.000
|
1.000
|
Hsc_gene_8267.t1
|
Hsc_gene_23174.t1;Hsc_gene_23175.t1;Hsc_gene_8267.t1;Hsc_gene_8288.t1
|
— |
A0JN87.1 Mitochondrial 2-oxodicarboxylate carrier [Bos taurus]
|
KAI1722061.1 mitochondrial carrier protein domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0055085
|
GO:0005575_0.769|GO:0110165_0.760|GO:0008150_0.748|GO:0016020_0.703|GO:0009987_0.665|GO:0003674_0.655|GO:0005622_0.650|GO:0005737_0.633|GO:0043226_0.614|GO:0043227_0.609|GO:0043229_0.602|GO:0043231_0.588|GO:0051179_0.524|GO:0006810_0.523|GO:0051234_0.523
|
IPR002067+10-23_23-37_64-84_115-133_163-181_220-242+|IPR018108+5-89_6-90_100-190_103-193_211-299_213-303+|IPR023395+2-304_7-295+|IPR051752+4-303+
|
— |
PF00153+6-90_103-193_213-303+Mitochondrial_carrier_protein
|
— |
PTHR46356+4-303+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-304
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.822
|
33491.030
|
10.006
|
17.500
|
20.395
|
13.487
|
37.500
|
62.500
|
13.816
|
6.579
|
49.013
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
642.603
|
1196.048
|
806.380
|
849.439
|
742.377
|
656.495
|
1003.313
|
974.218
|
177.081
|
342.978
|
271.879
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.799
|
-0.631
|
0.184
|
-0.227
|
— |
0.624
|
0.466
|
— | — | — | — | — | — |
No JSON data available for plots.