Hg_chrom7_TN10mRNA_14221
Organism: Heterodera glycines Gene Locus: chr7:5942234-5947437 Feature type: polypeptideProtein Sequence
Length: 1,006
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.948 | 0.948 | 0.868 | 0.514 | 0.779 | 1.478 | 0.793 | 1.243 | 0.795 | 1.263 | 0.557 | 1.169 | 1.27 | 1.74 | 1.663 | 1.264 | 0.668 | 0.994 | 0.765 | 0.322 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13421
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.269
|
0.185
|
0.041
|
0.634
|
0.118
|
0.258
|
0.153
|
0.054
|
0.548
|
0.118
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004595
|
1.000
|
2.000
|
Hsc_gene_8268.t1;Hsc_gene_8268.t2
|
Hsc_gene_8268.t1;Hsc_gene_8268.t2
|
— |
Q86NH1.1 Rho GTPase-activating protein syd-1 [Caenorhabditis elegans]
|
KAI3409788.1 Rho GTPase-activating protein syde2 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0007165
|
GO:0008150_0.923|GO:0009987_0.880|GO:0005575_0.852|GO:0110165_0.852|GO:0065007_0.803|GO:0005622_0.776|GO:0003674_0.709|GO:0005488_0.656|GO:0050789_0.656|GO:0050794_0.645|GO:0016020_0.632|GO:0005515_0.601|GO:0016043_0.562|GO:0071840_0.562|GO:0071944_0.557|GO:0050896_0.525
|
IPR000008+600-719+|IPR000198+758-971_769-968_772-922+|IPR001478+79-152_81-152_84-153_90-164+|IPR008936+750-970_754-968+|IPR035892+616-737_616-745+|IPR036034+71-171_79-152+|IPR052118+614-973+
|
SM00228+90-164+|SM00324+769-968+
|
PF00595+84-153+PDZ_domain|PF00620+772-922+RhoGAP_domain
|
— |
PTHR46150+614-973+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-24;175-592;972-1006
|
2.000
|
25-174;593-971
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.940
|
110934.300
|
9.899
|
36.500
|
23.757
|
9.145
|
46.521
|
53.479
|
14.314
|
9.443
|
53.678
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
401.536
|
1442.878
|
1017.033
|
443.011
|
138.197
|
143.697
|
967.879
|
392.741
|
36.311
|
24.948
|
29.818
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.734
|
-1.841
|
-1.090
|
-1.711
|
— |
2.763
|
1.348
|
1.443
|
— | — | — | — | — |
No JSON data available for plots.