Hg_chrom7_TN10mRNA_14224
Organism: Heterodera glycines Gene Locus: chr7:5959541-5962114 Feature type: polypeptideProtein Sequence
Length: 428
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.951 | 0.706 | 0.765 | 1.047 | 0.935 | 0.659 | 0.974 | 0.701 | 1.038 | 1.673 | 0.673 | 1.512 | 2.012 | 0.764 | 1.526 | 0.834 | 0.804 | 0.85 | 1.078 | 0.962 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13424
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.669
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.171
|
0.253
|
0.013
|
0.207
|
0.822
|
0.286
|
0.533
|
0.070
|
0.179
|
0.084
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011372
|
1.000
|
1.000
|
Hsc_gene_8272.t1
|
Hsc_gene_8272.t1
|
— |
P0DX24.1 3-beta-hydroxysteroid dehydrogenase [Mycolicibacterium neoaurum]
|
KAI1718526.1 3-beta hydroxysteroid dehydrogenase/isomerase family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006694|GO:0016616
|
GO:0005575_0.804|GO:0110165_0.804|GO:0008150_0.787|GO:0016020_0.756|GO:0005886_0.657|GO:0071944_0.657|GO:0003674_0.597|GO:0005622_0.590|GO:0005737_0.590|GO:0043226_0.533|GO:0043227_0.521|GO:0043229_0.509|GO:0043231_0.509
|
IPR002225+14-277+|IPR036291+10-348+|IPR050177+10-346+
|
— |
PF01073+14-277+3-beta_hydroxysteroid_dehydrogenase/isomerase_family
|
— |
PTHR43245+10-346+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-428
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.781
|
48161.000
|
8.636
|
12.000
|
23.131
|
13.318
|
39.486
|
60.514
|
13.318
|
9.813
|
46.963
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
216.776
|
116.409
|
129.095
|
278.792
|
466.975
|
574.910
|
268.018
|
273.519
|
41.464
|
126.901
|
90.285
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.123
|
1.217
|
0.712
|
0.316
|
-1.091
|
-1.177
|
— | — | — | — | — | — |
No JSON data available for plots.