SCN Proteipedia

Hg_chrom7_TN10mRNA_14226

Organism: Heterodera glycines Gene Locus: chr7:5965052-5969211 Feature type: polypeptide

Protein Sequence

Length: 780

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.76	0.984	0.862	0.884	1.026	1.677	0.839	1.987	0.883	1.04	0.466	1.659	1.246	1.183	1.308	1.282	1.114	0.835	0.197	0.603	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13426	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	1-Not_Clustered	0.729

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RTLKRTK	—	—	40-69	0.994	—	—	0.000	—	—	0.817	0.130	0.020	0.462	0.062	0.062	0.042	0.013	0.082	0.032

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004193	2.000	1.000	Hsc_gene_8274.t1	Hsc_gene_8274.t1	—	Q18192.2 Nuclear hormone receptor family member nhr-31 [Caenorhabditis elegans]	KAI1722050.1 zinc finger, c4 type (two domains) domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	GO:0000978\|GO:0003700\|GO:0006355\|GO:0008270\|GO:0043565	GO:0008150_0.855\|GO:0003674_0.761\|GO:0005488_0.738\|GO:0065007_0.737\|GO:0050789_0.731\|GO:0005575_0.729\|GO:0009987_0.723\|GO:0110165_0.711\|GO:0050794_0.702\|GO:0005622_0.637\|GO:0097159_0.622\|GO:0008152_0.616\|GO:0043226_0.612\|GO:0019222_0.611\|GO:0031323_0.611\|GO:0044237_0.611\|GO:0044238_0.611\|GO:0043170_0.609\|GO:0060255_0.605\|GO:0080090_0.601\|GO:0009058_0.594\|GO:0009059_0.594\|GO:0010467_0.594\|GO:0044249_0.594\|GO:0043229_0.593\|GO:0009889_0.589\|GO:0031326_0.589\|GO:0050896_0.589\|GO:0010556_0.588\|GO:0003676_0.580\|GO:0006139_0.576\|GO:0034654_0.576\|GO:0010468_0.572\|GO:0016070_0.566\|GO:0032774_0.566\|GO:0090304_0.566\|GO:0141187_0.566\|GO:0019219_0.563\|GO:0016020_0.552\|GO:0006351_0.551\|GO:0051252_0.550\|GO:2001141_0.550\|GO:0032501_0.547\|GO:0006355_0.541\|GO:0003677_0.537\|GO:0043565_0.537	IPR000536+196-465_254-449_264-436+\|IPR001628+68-139_68-143_70-137_71-87_71-97_87-102_120-128_128-136+\|IPR001723+132-142_287-303_363-378_424-441+\|IPR013088+61-163+\|IPR035500+231-463_235-471+\|IPR049636+71-146+\|IPR052496+56-674+	SM00399+68-139+\|SM00430+264-436+	PF00104+254-449+Ligand-binding_domain_of_nuclear_hormone_receptor\|PF00105+70-137+Zinc_finger,_C4_type_(two_domains)	G3DSA:3.30.50.10:FF:000030+63-161+Nuclear_Hormone_Receptor_family	PTHR47519+56-674+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-33;142-186;459-780	2.000	34-141;187-458	3cbb_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.742	86433.020	6.739	4.500	24.359	10.769	50.897	49.103	13.462	10.897	52.564

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	purple	899.684	1146.877	819.180	858.142	973.490	1740.342	1365.216	1540.989	403.130	467.180	439.730

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.713	-0.555	0.174	—	0.854	-0.340	—	—	—	—	—	—	—

No JSON data available for plots.

Back to Browser