Hg_chrom7_TN10mRNA_14228
Organism: Heterodera glycines Gene Locus: chr7:5972808-5973719 Feature type: polypeptideProtein Sequence
Length: 236
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.542 | 1.182 | 0.924 | 0.877 | 1.554 | 1.847 | 0.656 | 0.847 | 1.036 | 1.145 | 0.642 | 0.997 | 1.177 | 1.059 | 1.73 | 1.15 | 1.111 | 0.899 | 0.652 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13428
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.599
|
0.214
|
0.006
|
0.531
|
0.082
|
0.132
|
0.124
|
0.079
|
0.042
|
0.135
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011375
|
1.000
|
1.000
|
Hsc_gene_8276.t1
|
Hsc_gene_8276.t1
|
— |
Q91X96.1 Guanine nucleotide exchange factor MSS4 [Mus musculus]
|
KAI3409779.1 1-acylglycerol-3-phosphate O-acyltransferase abhd5 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005085|GO:0007264
|
GO:0008150_0.929|GO:0009987_0.883|GO:0003674_0.813|GO:0005488_0.811|GO:0071840_0.768|GO:0016043_0.765|GO:0005575_0.647|GO:0110165_0.647|GO:0005622_0.593
|
IPR007515+106-236_117-236_158-235+|IPR011057+119-236+|IPR011323+117-236+
|
— |
PF04421+158-235+Mss4_protein
|
G3DSA:2.170.150.10:FF:000005+117-236+Guanine_nucleotide_exchange_factor_MSS4
|
PTHR13276+106-236+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-124
|
1.000
|
125-236
|
1hxr_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.651
|
26682.960
|
5.759
|
-2.000
|
28.814
|
6.780
|
55.932
|
44.068
|
14.407
|
14.407
|
49.153
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
yellow
|
847.338
|
581.100
|
801.780
|
733.980
|
741.926
|
750.978
|
1183.959
|
571.081
|
1384.127
|
657.206
|
968.744
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.234
|
0.200
|
— | — | — |
0.668
|
-0.499
|
1.195
|
— | — | — | — | — |
No JSON data available for plots.