Hg_chrom7_TN10mRNA_14229
Organism: Heterodera glycines Gene Locus: chr7:5973940-5976238 Feature type: polypeptideProtein Sequence
Length: 435
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.149 | 0.481 | 0.961 | 0.317 | 1.073 | 1.179 | 0.93 | 1.609 | 1.073 | 1.056 | 0.418 | 2.434 | 1.086 | 1.105 | 1.407 | 1.182 | 0.678 | 0.975 | 1.945 | 0.676 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13429
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.649
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum|lysosome_vacuole
|
— | — |
63-83
|
0.998
|
— | — | — | — |
0.000
|
— | — |
0.254
|
0.389
|
0.261
|
0.403
|
0.631
|
0.596
|
0.541
|
0.083
|
0.146
|
0.133
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011376
|
1.000
|
1.000
|
Hsc_gene_8277.t1
|
Hsc_gene_8277.t1
|
— |
O02218.2 Abhydrolase domain-containing protein lid-1 [Caenorhabditis elegans]
|
KAI3409779.1 1-acylglycerol-3-phosphate O-acyltransferase abhd5 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.826|GO:0005575_0.723|GO:0110165_0.714|GO:0009987_0.668|GO:0003674_0.647|GO:0008152_0.615|GO:0005622_0.568|GO:0044238_0.554|GO:0043226_0.516|GO:0043229_0.503
|
IPR000073+104-356_128-143_176-189_190-203+|IPR029058+68-368_88-366+
|
— |
PF00561+104-356+alpha/beta_hydrolase_fold
|
— |
PTHR42886+56-366+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-30;377-435
|
1.000
|
31-376
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.617
|
48347.910
|
6.272
|
-2.000
|
24.598
|
11.954
|
43.678
|
56.322
|
12.874
|
11.724
|
50.575
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
1755.236
|
4537.976
|
3952.766
|
1292.728
|
948.788
|
1074.188
|
2216.734
|
2482.673
|
1178.914
|
605.278
|
851.122
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.429
|
-1.949
|
-1.504
|
-0.478
|
0.194
|
1.056
|
1.109
|
— | — | — | — | — | — |
No JSON data available for plots.