Hg_chrom7_TN10mRNA_14231
Organism: Heterodera glycines Gene Locus: chr7:5982750-5987503 Feature type: polypeptideProtein Sequence
Length: 794
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.025 | 0.967 | 1.237 | 0.608 | 1.637 | 1.195 | 0.405 | 0.819 | 1.175 | 1.6 | 0.782 | 1.482 | 1.085 | 0.799 | 1.311 | 0.882 | 0.661 | 1.03 | 0.291 | 0.667 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13431
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — |
116-136
|
0.999
|
— | — | — | — |
0.000
|
— | — |
0.314
|
0.158
|
0.007
|
0.596
|
0.281
|
0.464
|
0.431
|
0.068
|
0.259
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_8279.t1;Hsc_gene_8280.t1;Hsc_gene_8280.t2
|
— |
Q9JME5.2 AP-3 complex subunit beta-2 [Mus musculus]
|
KAI1722080.1 non-SMC mitotic condensation complex subunit 1 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006886|GO:0016192|GO:0030117|GO:0030123
|
GO:0005575_0.937|GO:0110165_0.928|GO:0016020_0.873|GO:0005622_0.871|GO:0008150_0.729|GO:0043226_0.719|GO:0005737_0.714|GO:0009987_0.699|GO:0043229_0.688|GO:0043227_0.663|GO:0005886_0.662|GO:0071944_0.662|GO:0043231_0.610|GO:0051179_0.570|GO:0051234_0.552|GO:0006810_0.531
|
IPR002553+31-583+|IPR011989+25-633+|IPR016024+31-699+|IPR026739+25-755+|IPR026740+3-792+
|
— |
PF01602+31-583+Adaptin_N_terminal_region
|
— |
PTHR11134+25-755+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
624-794
|
1.000
|
1-623
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.791
|
89905.480
|
4.613
|
-33.500
|
29.849
|
8.186
|
48.866
|
51.134
|
13.224
|
16.625
|
46.096
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
lightcyan
|
2022.984
|
1916.441
|
2262.933
|
1657.448
|
2017.545
|
2097.398
|
3331.923
|
2015.101
|
1849.939
|
1726.054
|
1779.148
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.347
|
-0.340
|
0.252
|
— |
0.679
|
— |
0.868
|
— | — | — | — | — |
No JSON data available for plots.