Hg_chrom7_TN10mRNA_14234
Organism: Heterodera glycines Gene Locus: chr7:5988406-5992761 Feature type: polypeptideProtein Sequence
Length: 857
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.855 | 1.031 | 0.764 | 0.402 | 1.05 | 1.257 | 0.75 | 1.634 | 0.622 | 1.277 | 0.849 | 0.961 | 1.297 | 1.167 | 1.596 | 1.717 | 0.88 | 0.619 | 0.987 | 0.378 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13433
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KRRP,RKRR,PSEKRRG
|
39-59
|
0.999
|
65-90
|
0.992
|
— | — |
0.000
|
— | — |
0.375
|
0.255
|
0.033
|
0.640
|
0.141
|
0.160
|
0.128
|
0.169
|
0.384
|
0.039
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004596
|
1.000
|
2.000
|
Hsc_gene_8280.t1;Hsc_gene_8280.t2
|
Hsc_gene_8280.t1;Hsc_gene_8280.t2
|
— |
B0VXE8.1 Cyclin-dependent kinase 14 [Callithrix jacchus]
|
KAI1718532.1 protein kinase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0008150_0.843|GO:0003674_0.814|GO:0003824_0.814|GO:0140096_0.814|GO:0009987_0.812|GO:0005575_0.803|GO:0004672_0.786|GO:0016301_0.786|GO:0016740_0.786|GO:0016772_0.786|GO:0016773_0.786|GO:0065007_0.776|GO:0110165_0.774|GO:0050789_0.772|GO:0050794_0.763|GO:0005622_0.695|GO:0016020_0.639|GO:0050896_0.608|GO:0004674_0.607|GO:0051716_0.573|GO:0016043_0.548|GO:0071840_0.548|GO:0007154_0.542|GO:0023052_0.533|GO:0043226_0.514|GO:0043229_0.503
|
IPR000719+527-810_528-810+|IPR008271+641-653+|IPR011009+524-815+|IPR050108+527-810+
|
SM00220+527-810+
|
PF00069+528-810+Protein_kinase_domain
|
G3DSA:1.10.510.10:FF:000624+602-819+Mitogen-activated_protein_kinase
|
PTHR24056+527-810+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-533;855-857
|
1.000
|
534-854
|
5g6v_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.954
|
95486.280
|
10.122
|
39.000
|
27.188
|
10.502
|
53.909
|
46.091
|
16.686
|
10.502
|
50.992
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
957.405
|
3776.678
|
2275.082
|
710.265
|
407.344
|
520.908
|
427.316
|
1666.355
|
241.253
|
338.724
|
296.951
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.961
|
-2.548
|
-1.571
|
-0.833
|
0.368
|
-0.275
|
1.578
|
-1.822
|
— | — | — | — | — |
No JSON data available for plots.