SCN Proteipedia

Hg_chrom7_TN10mRNA_14235

Organism: Heterodera glycines Gene Locus: chr7:5995270-5998932 Feature type: polypeptide

Protein Sequence

Length: 736

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.695	1.106	0.914	0.328	1.313	1.01	0.841	0.679	1.419	1.34	0.885	1.758	1.132	0.915	1.248	1.048	0.869	1.112	0.418	0.719	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13434	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	23-Not_Clustered	0.500

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	nucleus	—	—	—	—	—	—	—	—	0.001	—	—	0.591	0.161	0.011	0.462	0.156	0.257	0.071	0.117	0.093	0.104

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000825	5.000	1.000	Hsc_gene_8281.t1	Hsc_gene_15394.t1;Hsc_gene_8281.t1	—	Q94392.2 Vesicle-fusing ATPase [Caenorhabditis elegans]	KAI1718533.1 ATPase family associated with various cellular activities (AAA) domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005524\|GO:0016887\|GO:0035494	GO:0008150_0.923\|GO:0005575_0.874\|GO:0110165_0.855\|GO:0009987_0.796\|GO:0051179_0.671\|GO:0005622_0.642\|GO:0006810_0.637\|GO:0051234_0.637\|GO:0016020_0.609\|GO:0003674_0.593\|GO:0071840_0.591\|GO:0005737_0.587\|GO:0016043_0.586\|GO:0043226_0.503	IPR003338+3-84_3-86+\|IPR003593+262-410_446-663+\|IPR003959+266-407+\|IPR003960+378-396+\|IPR009010+4-85+\|IPR027417+220-408_231-509_510-689_558-660+\|IPR029067+87-210+\|IPR039812+3-728+\|IPR041569+435-469+\|IPR054419+662-724+	SM00382+262-410_446-663+\|SM01073+3-86+	PF00004+266-407+ATPase_family_associated_with_various_cellular_activities_(AAA)\|PF02359+3-84+Cell_division_protein_48_(CDC48),_N-terminal_domain\|PF17862+435-469+AAA+_lid_domain\|PF21964+662-724+NSF,_AAA+_ATPase_lid_domain	G3DSA:1.10.8.60:FF:000026+409-498+vesicle-fusing_ATPase_isoform_X1\|G3DSA:3.40.50.300:FF:000166+558-660+vesicle-fusing_ATPase_isoform_X1\|G3DSA:3.40.50.300:FF:000187+218-409+Vesicular-fusion_ATPase_SEC18	PTHR23078+3-728+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-736	1nsf_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.692	82162.140	6.232	-2.000	26.223	8.424	47.554	52.446	13.315	12.908	48.505

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	violet	1610.912	1593.216	1784.313	1839.676	1955.214	2058.265	2760.259	1735.903	1360.308	879.940	1085.812

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	—	0.153	—	—	0.434	-0.350	0.812	—	—	—	—	—

No JSON data available for plots.

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