Hg_chrom7_TN10mRNA_14236
Organism: Heterodera glycines Gene Locus: chr7:5999629-6003111 Feature type: polypeptideProtein Sequence
Length: 662
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.107 | 0.984 | 0.824 | 0.365 | 1.057 | 0.93 | 0.809 | 1.057 | 1.309 | 1.327 | 0.893 | 1.066 | 1.888 | 0.697 | 1.141 | 0.842 | 1.065 | 0.847 | 0.232 | 1.2 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13435
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.594
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
LGEV
|
— | — | — | — | — | — |
0.000
|
— | — |
0.117
|
0.879
|
0.031
|
0.129
|
0.156
|
0.184
|
0.200
|
0.226
|
0.161
|
0.055
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011379
|
1.000
|
1.000
|
Hsc_gene_8282.t1
|
Hsc_gene_8282.t1
|
— |
Q21153.3 Probable calcium-binding mitochondrial carrier K02F3.2 [Caenorhabditis elegans]
|
KAH7720892.1 Calcium-binding mitochondrial carrier protein Aralar2 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509|GO:0055085
|
GO:0008150_0.853|GO:0005575_0.808|GO:0110165_0.803|GO:0009987_0.782|GO:0016020_0.724|GO:0003674_0.720|GO:0005622_0.720|GO:0005737_0.698|GO:0043226_0.677|GO:0043229_0.666|GO:0006810_0.656|GO:0051179_0.656|GO:0051234_0.656|GO:0043227_0.638|GO:0043231_0.619|GO:0055085_0.602|GO:0008152_0.556|GO:0005215_0.508|GO:0022857_0.508
|
IPR002048+49-77_79-114_83-111_150-185_154-182+|IPR002067+325-338_338-352_386-406_433-451_475-493_519-541+|IPR011992+6-186_156-276+|IPR018108+320-411_322-414_418-502_419-501_510-598_512-600+|IPR023395+318-601_321-595+|IPR051028+212-654+
|
SM00054+49-77_83-111_154-182+
|
PF00153+322-414_419-501_512-600+Mitochondrial_carrier_protein
|
G3DSA:1.50.40.10:FF:000004+317-601+Calcium-binding_mitochondrial_carrier_protein_Aralar1
|
PTHR45678+212-654+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-662
|
4p5w_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.679
|
74114.830
|
8.318
|
11.000
|
24.471
|
13.293
|
44.713
|
55.287
|
13.595
|
10.876
|
47.734
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey60
|
1099.204
|
1311.249
|
1411.849
|
969.944
|
1086.418
|
1115.546
|
1165.381
|
1449.532
|
1076.099
|
810.722
|
924.455
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.122
|
-0.572
|
-0.434
|
0.132
|
— | — |
0.274
|
— | — | — | — | — | — |
No JSON data available for plots.