Hg_chrom7_TN10mRNA_14237
Organism: Heterodera glycines Gene Locus: chr7:6003656-6007032 Feature type: polypeptideProtein Sequence
Length: 594
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.763 | 1.175 | 0.704 | 0.697 | 0.898 | 0.691 | 0.762 | 1.515 | 1.534 | 1.365 | 0.816 | 1.485 | 1.496 | 1.263 | 1.203 | 0.842 | 1.076 | 0.765 | 0.907 | 1.04 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13436
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.824
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
RRRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.043
|
0.064
|
0.019
|
0.114
|
0.184
|
0.351
|
0.247
|
0.004
|
0.769
|
0.037
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011380
|
1.000
|
1.000
|
Hsc_gene_8283.t1
|
Hsc_gene_8283.t1
|
— |
P17972.1 Potassium voltage-gated channel protein Shaw [Drosophila melanogaster]
|
KAI1714834.1 ion transport protein domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005216|GO:0005249|GO:0005515|GO:0006811|GO:0006813|GO:0008076|GO:0016020|GO:0051260|GO:0055085
|
GO:0008150_0.938|GO:0009987_0.884|GO:0006810_0.861|GO:0051179_0.861|GO:0051234_0.861|GO:0003674_0.839|GO:0005575_0.805|GO:0110165_0.801|GO:0055085_0.779|GO:0071944_0.775|GO:0005886_0.769|GO:0016020_0.769|GO:0006811_0.746|GO:0034220_0.743|GO:0005215_0.731|GO:0022857_0.731|GO:0022803_0.714|GO:0005216_0.710|GO:0015075_0.710|GO:0015267_0.710|GO:0098660_0.668|GO:0022836_0.667|GO:0006812_0.653|GO:0098655_0.643|GO:0030001_0.640|GO:0098662_0.632|GO:0008324_0.631|GO:0015318_0.625|GO:0005261_0.617|GO:0005244_0.613|GO:0022832_0.613|GO:0022890_0.600|GO:0046873_0.599|GO:0006813_0.582|GO:0071805_0.576|GO:0022843_0.561|GO:0005267_0.555|GO:0015079_0.555|GO:0005249_0.550|GO:0065007_0.518
|
IPR000210+5-105+|IPR003131+7-97+|IPR003968+47-57_323-331_347-361_420-431+|IPR003974+48-61_63-78_81-102_160-172_445-459+|IPR005821+171-443+|IPR011333+1-115_6-105+|IPR027359+140-330+
|
SM00225+5-105+
|
PF00520+171-443+Ion_transport_protein|PF02214+7-97+BTB/POZ_domain
|
G3DSA:1.10.287.70:FF:000002+331-443+Potassium_voltage-gated_channel_subfamily_a_member|G3DSA:3.30.710.10:FF:000020+1-115+Potassium_voltage-gated_channel_protein_Shaw
|
PTHR11537+2-477+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
504-594
|
1.000
|
1-503
|
3kvt_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.848
|
67073.530
|
8.991
|
21.000
|
23.569
|
13.131
|
43.771
|
56.229
|
14.310
|
9.259
|
47.980
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
666.580
|
731.260
|
2087.480
|
710.210
|
168.763
|
232.822
|
237.095
|
2190.976
|
74.707
|
475.779
|
303.891
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.284
|
-0.179
|
-1.447
|
-2.106
|
0.479
|
— |
3.137
|
-3.069
|
— | — | — | — | — |
No JSON data available for plots.