Hg_chrom7_TN10mRNA_14239
Organism: Heterodera glycines Gene Locus: chr7:6016072-6019720 Feature type: polypeptideProtein Sequence
Length: 783
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.728 | 1.188 | 0.836 | 0.484 | 1.149 | 1.506 | 0.517 | 1.277 | 1.022 | 1.45 | 0.619 | 1.878 | 1.525 | 1.449 | 1.016 | 1.368 | 0.984 | 0.619 | 0.982 | 0.413 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13438
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.535
|
0.065
|
0.005
|
0.605
|
0.105
|
0.119
|
0.162
|
0.042
|
0.071
|
0.022
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011382
|
1.000
|
1.000
|
Hsc_gene_8285.t1
|
Hsc_gene_8285.t1
|
— |
Q20374.2 Protein PAT1 homolog 1 [Caenorhabditis elegans]
|
KAI3409767.1 Protein PAT1 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000290
|
GO:0005575_0.934|GO:0110165_0.934|GO:0005622_0.870|GO:0008150_0.848|GO:0005737_0.762|GO:0043226_0.731|GO:0043229_0.707|GO:0009987_0.607|GO:0065007_0.607|GO:0050789_0.595|GO:0050794_0.583|GO:0016020_0.519|GO:0043228_0.519|GO:0043232_0.519
|
IPR039900+28-671+
|
— | — | — |
PTHR21551+28-671+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
79-122;170-245;300-403
|
4.000
|
1-78;123-169;246-299;404-783
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.686
|
88114.000
|
5.713
|
-9.000
|
23.116
|
10.728
|
49.681
|
50.319
|
11.622
|
11.494
|
48.914
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
2474.208
|
1988.319
|
1846.787
|
1600.939
|
1459.191
|
1612.170
|
1776.302
|
1730.481
|
1887.500
|
4903.715
|
3611.051
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.336
|
-0.450
|
— |
-0.166
|
— | — | — | — | — | — | — | — | — |
No JSON data available for plots.