Hg_chrom7_TN10mRNA_14242
Organism: Heterodera glycines Gene Locus: chr7:6023661-6024531 Feature type: polypeptideProtein Sequence
Length: 245
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.57 | 1.139 | 1.929 | 0.563 | 1.565 | 0.942 | 0.437 | 1.02 | 0.726 | 0.938 | 1.546 | 2.161 | 1.134 | 0.706 | 1.249 | 1.458 | 0.669 | 0.68 | 0.942 | 0.36 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13441
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Not_Clustered
|
0.408
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
MKERTAK,RKKEHKVQIDDRFKKL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.794
|
0.183
|
0.023
|
0.240
|
0.013
|
0.019
|
0.051
|
0.007
|
0.064
|
0.237
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004586
|
2.000
|
1.000
|
Hsc_gene_19714.t1
|
Hsc_gene_19714.t1
|
— |
Q9H501.1 ESF1 homolog [Homo sapiens]
|
KAF7633354.1 NUC153 domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006364
|
GO:0005575_0.924|GO:0110165_0.924|GO:0003674_0.818|GO:0005488_0.818|GO:0097159_0.715|GO:0003676_0.713|GO:0003723_0.673|GO:0005622_0.569|GO:0008150_0.537|GO:0043226_0.525|GO:0016020_0.523|GO:0043229_0.513
|
IPR039754+6-233+
|
— | — | — |
PTHR12202+6-233+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-182;241-245
|
1.000
|
183-240
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.552
|
28196.400
|
5.039
|
-6.500
|
38.367
|
8.571
|
61.224
|
38.776
|
18.367
|
20.000
|
48.163
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
498.325
|
100.703
|
90.221
|
123.471
|
110.104
|
100.671
|
113.855
|
153.395
|
231.166
|
1709.641
|
1076.009
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.389
|
— |
0.562
|
— | — | — |
0.503
|
— |
-2.995
|
— |
-3.785
|
— | — |
No JSON data available for plots.