Hg_chrom7_TN10mRNA_14243
Organism: Heterodera glycines Gene Locus: chr7:6024828-6026700 Feature type: polypeptideProtein Sequence
Length: 370
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.534 | 1.32 | 0.934 | 1.118 | 1.081 | 0.832 | 0.45 | 1.216 | 1.562 | 1.424 | 0.86 | 1.272 | 1.952 | 0.832 | 1.544 | 0.849 | 0.886 | 0.737 | 1.247 | 0.954 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13442
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.526
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RKQLDWREHQSYLKLRDR
|
13-34
|
0.970
|
— | — | — | — |
0.001
|
— | — |
0.340
|
0.314
|
0.052
|
0.537
|
0.147
|
0.125
|
0.283
|
0.024
|
0.128
|
0.386
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000611
|
6.000
|
1.000
|
Hsc_gene_8261.t1
|
— | — | — |
KAI6240719.1 CYTH-like domain-containing protein [Aphelenchoides fujianensis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.955|GO:0003674_0.855|GO:0032501_0.785|GO:0005488_0.772|GO:0042592_0.696|GO:0048871_0.679|GO:0036094_0.677|GO:0043167_0.677|GO:0001894_0.675|GO:0060249_0.675|GO:0097159_0.673|GO:0001895_0.670|GO:0045494_0.670|GO:0043168_0.662|GO:0008289_0.661|GO:0000166_0.657|GO:1901265_0.657|GO:1901363_0.657|GO:0005543_0.656|GO:0017076_0.655|GO:0032553_0.655|GO:0032555_0.655|GO:0097367_0.655|GO:0035639_0.654|GO:0005525_0.650|GO:0019001_0.650|GO:0032561_0.650|GO:0035091_0.650|GO:0070300_0.650
|
IPR053227+101-358+
|
— | — | — |
PTHR34932+101-358+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
368-370
|
1.000
|
1-367
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.716
|
43364.090
|
8.349
|
10.500
|
27.297
|
14.324
|
47.568
|
52.432
|
15.676
|
11.622
|
42.973
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellowgreen
|
482.177
|
689.721
|
473.515
|
538.157
|
490.755
|
422.627
|
276.646
|
748.776
|
442.562
|
412.529
|
425.400
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.771
|
-0.495
|
0.293
|
— |
-0.201
|
-0.602
|
0.723
|
-1.296
|
— | — | — | — | — |
No JSON data available for plots.