Hg_chrom7_TN10mRNA_14244
Organism: Heterodera glycines Gene Locus: chr7:6027520-6030362 Feature type: polypeptideProtein Sequence
Length: 591
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.787 | 1.18 | 1.477 | 0.759 | 1.495 | 1.302 | 0.564 | 1.438 | 0.94 | 1.258 | 0.82 | 1.692 | 1.175 | 0.911 | 0.932 | 1.015 | 0.721 | 0.743 | 0.651 | 1.045 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13443
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— |
PKPS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.747
|
0.221
|
0.006
|
0.656
|
0.224
|
0.233
|
0.149
|
0.026
|
0.132
|
0.034
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001404
|
1.000
|
4.000
|
Hsc_gene_8287.t1;Hsc_gene_8287.t2;Hsc_gene_8291.t1;Hsc_gene_8291.t2
|
Hsc_gene_8287.t1;Hsc_gene_8287.t2;Hsc_gene_8290.t1;Hsc_gene_8291.t1;Hsc_gene_8291.t2
|
— |
Q24574.2 Ubiquitin carboxyl-terminal hydrolase 47 [Drosophila melanogaster]
|
KAH7720328.1 ubiquitin carboxyl-terminal hydrolase [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004843|GO:0016579
|
GO:0008150_0.881|GO:0005575_0.791|GO:0110165_0.789|GO:0003674_0.743|GO:0009987_0.733|GO:0005622_0.721|GO:0065007_0.658|GO:0050789_0.642|GO:0016020_0.605|GO:0003824_0.602|GO:0050794_0.596|GO:0005737_0.570|GO:0043226_0.562|GO:0140096_0.559|GO:0016787_0.557|GO:0043229_0.548|GO:0008152_0.541|GO:0043227_0.536|GO:0008233_0.531|GO:0050896_0.531|GO:0043170_0.521|GO:0019783_0.515|GO:0044238_0.508
|
IPR001394+105-486+|IPR018200+106-121_419-436+|IPR028889+105-489+|IPR038765+101-492+|IPR050164+85-514+
|
— |
PF00443+105-486+Ubiquitin_carboxyl-terminal_hydrolase
|
— |
PTHR24006+85-514+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-30;355-403;503-591
|
2.000
|
31-354;404-502
|
5chv_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.796
|
67284.200
|
4.492
|
-33.500
|
29.949
|
11.506
|
51.607
|
48.393
|
12.860
|
17.090
|
48.054
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
lightcyan
|
1365.342
|
1422.520
|
1216.826
|
1204.302
|
1575.457
|
1680.570
|
2568.032
|
1514.566
|
952.270
|
1065.818
|
1017.154
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.455
|
-0.377
|
— |
0.356
|
— |
0.622
|
-0.257
|
0.905
|
— | — | — | — | — |
No JSON data available for plots.