Hg_chrom7_TN10mRNA_14247
Organism: Heterodera glycines Gene Locus: chr7:6039413-6041532 Feature type: polypeptideProtein Sequence
Length: 360
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.001 | 1.227 | 0.96 | 0.287 | 1.111 | 0.926 | 0.728 | 1.111 | 0.802 | 1.314 | 0.968 | 0.654 | 1.08 | 1.549 | 1.304 | 1.548 | 0.546 | 0.758 | 0.641 | 0.654 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13446
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.990
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKKK,KKKYAKEAWPAEMRRRSG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.926
|
0.035
|
0.010
|
0.255
|
0.034
|
0.023
|
0.034
|
0.016
|
0.077
|
0.020
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011387
|
1.000
|
1.000
|
Hsc_gene_8295.t1
|
Hsc_gene_8295.t1
|
— |
Q28147.1 Nuclear inhibitor of protein phosphatase 1 [Bos taurus]
|
KAI3409761.1 Serine/threonine-protein kinase smg1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.808|GO:0005575_0.760|GO:0110165_0.758|GO:0005622_0.710|GO:0043226_0.672|GO:0003674_0.669|GO:0016020_0.661|GO:0043229_0.648|GO:0005488_0.647|GO:0043227_0.584|GO:0043231_0.534|GO:0009987_0.528|GO:0005515_0.512
|
IPR000253+42-95_43-95_43-112+|IPR008984+15-124+|IPR050923+11-241+
|
SM00240+42-95+
|
PF00498+43-112+FHA_domain
|
G3DSA:2.60.200.20:FF:000019+1-125+Nuclear_inhibitor_of_protein_phosphatase
|
PTHR23308+11-241+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
125-360
|
1.000
|
1-124
|
2jpe_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.923
|
39633.610
|
8.625
|
7.000
|
26.944
|
9.167
|
50.000
|
50.000
|
15.000
|
11.944
|
53.333
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
darkorange
|
707.963
|
909.412
|
677.931
|
784.271
|
874.982
|
774.923
|
1122.161
|
689.156
|
455.250
|
568.588
|
520.015
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.653
|
-0.351
|
0.319
|
0.126
|
-0.161
|
0.545
|
— |
0.846
|
— | — | — | — | — |
No JSON data available for plots.