SCN Proteipedia

Hg_chrom7_TN10mRNA_14248

Organism: Heterodera glycines Gene Locus: chr7:6042021-6050195 Feature type: polypeptide

Protein Sequence

Length: 1,960

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.724	1.198	0.798	0.686	1.105	1.531	0.565	1.276	1.281	1.558	0.928	1.651	1.46	0.805	1.114	1.188	0.753	0.696	1.217	0.63	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13447	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	nucleus	—	KRRR	—	—	—	—	—	—	0.000	—	—	0.558	0.208	0.016	0.456	0.160	0.339	0.267	0.021	0.162	0.035

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004597	1.000	2.000	Hsc_gene_8297.t1;Hsc_gene_8297.t2	Hsc_gene_8296.t1;Hsc_gene_8297.t1;Hsc_gene_8297.t2	—	O01510.3 Serine/threonine-protein kinase smg-1 [Caenorhabditis elegans]	KAI3409761.1 Serine/threonine-protein kinase smg1 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000184\|GO:0004674\|GO:0005515\|GO:0016310	GO:0008150_0.916\|GO:0009987_0.848\|GO:0005575_0.835\|GO:0110165_0.830\|GO:0065007_0.772\|GO:0050789_0.755\|GO:0005622_0.718\|GO:0008152_0.709\|GO:0050794_0.703\|GO:0003674_0.690\|GO:0044238_0.687\|GO:0044237_0.677\|GO:0043170_0.668\|GO:0009058_0.631\|GO:0005737_0.606\|GO:0050896_0.605\|GO:0043226_0.598\|GO:0019222_0.596\|GO:0016020_0.591\|GO:0044249_0.591\|GO:0006139_0.585\|GO:0009059_0.580\|GO:0016043_0.574\|GO:0071840_0.574\|GO:0043229_0.573\|GO:0048519_0.567\|GO:0060255_0.567\|GO:0048523_0.555\|GO:0051716_0.552\|GO:0090304_0.547\|GO:0003824_0.543\|GO:0031323_0.513\|GO:0016740_0.512	IPR000403+1504-1893_1530-1854_1531-1908+\|IPR003152+1928-1960_1932-1959+\|IPR011009+1437-1869+\|IPR031559+102-799+\|IPR036940+1709-1875+\|IPR050517+1129-1959+	SM00146+1531-1908+\|SM01343+1928-1960+\|SM01345+1333-1459+	PF00454+1530-1854+Phosphatidylinositol_3-_and_4-kinase\|PF02260+1932-1959+FATC_domain\|PF15785+102-799+Serine/threonine-protein_kinase_smg-1	—	PTHR11139+1129-1959+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-32;1618-1681	2.000	33-1617;1682-1960	7pw6_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.735	223706.820	8.086	36.000	25.153	11.531	49.184	50.816	14.133	11.020	44.184

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	3873.636	7737.549	4164.314	3300.017	2562.125	2284.872	2353.600	3678.542	3738.200	4363.126	4095.301

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.123	-1.367	-0.227	-0.397	—	—	0.582	-0.503	—	—	—	—	—

No JSON data available for plots.

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