Hg_chrom7_TN10mRNA_14249
Organism: Heterodera glycines Gene Locus: chr7:6051013-6053380 Feature type: polypeptideProtein Sequence
Length: 390
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.924 | 1.55 | 0.839 | 0.796 | 0.684 | 0.855 | 0.549 | 1.667 | 1.14 | 1.04 | 1.01 | 1.207 | 0.997 | 1.134 | 0.68 | 1.355 | 1.051 | 1.166 | 3.156 | 0.302 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13448
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.649
|
0.091
|
0.016
|
0.611
|
0.175
|
0.350
|
0.221
|
0.036
|
0.175
|
0.030
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011388
|
1.000
|
1.000
|
Hsc_gene_8298.t1
|
Hsc_gene_8298.t1;Hsc_gene_8298.t2
|
— |
A0A1L8EXB5.1 Actin-related protein 2/3 complex subunit 1A-B [Xenopus laevis]
|
KAI1726979.1 actin-related protein 2/3 complex subunit 1A [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0005885|GO:0015629|GO:0034314
|
GO:0005575_0.888|GO:0110165_0.819|GO:0008150_0.707|GO:0005622_0.668|GO:0016020_0.616|GO:0043226_0.572|GO:0009987_0.567|GO:0043229_0.562|GO:0005737_0.525
|
IPR001680+50-89_51-88_57-88_96-135_144-181_154-180_202-240_244-284_330-373+|IPR015943+12-374+|IPR017383+8-378_10-376+|IPR036322+14-376+
|
SM00320+50-89_96-135_144-181_202-240_244-284_330-373+
|
PF00400+51-88_154-180+WD_domain,_G-beta_repeat
|
— |
PTHR10709+10-376+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
390-390
|
1.000
|
1-389
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.876
|
43449.560
|
8.418
|
11.500
|
22.051
|
12.051
|
47.949
|
52.051
|
13.333
|
8.718
|
55.641
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey60
|
2666.180
|
2828.790
|
1925.770
|
1847.563
|
1966.563
|
1948.544
|
2255.056
|
2364.968
|
1436.996
|
4910.318
|
3421.751
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.785
|
-0.752
|
— | — | — |
0.221
|
— | — | — | — | — | — | — |
No JSON data available for plots.