SCN Proteipedia

Hg_chrom7_TN10mRNA_14251

Organism: Heterodera glycines Gene Locus: chr7:6053575-6057840 Feature type: polypeptide

Protein Sequence

Length: 747

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.872	0.934	1.022	0.554	0.937	0.687	0.574	1.004	0.833	1.7	0.771	1.417	1.376	0.85	1.53	1.167	0.944	1.014	1.03	1.024	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13449	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	RRHPSVPTNNFKKRIKRRV	12-36	0.976	—	—	—	—	0.000	—	—	0.098	0.145	0.046	0.153	0.348	0.380	0.199	0.016	0.706	0.018

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004598	2.000	1.000	Hsc_gene_8299.t1	Hsc_gene_8299.t1	—	Q14028.2 Cyclic nucleotide-gated cation channel beta-1 [Homo sapiens]	KAI1722094.1 cyclic nucleotide-binding domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085	GO:0008150_0.885\|GO:0005575_0.876\|GO:0110165_0.871\|GO:0009987_0.851\|GO:0016020_0.841\|GO:0003674_0.790\|GO:0051179_0.766\|GO:0006810_0.758\|GO:0051234_0.758\|GO:0071944_0.749\|GO:0005886_0.743\|GO:0055085_0.672\|GO:0006811_0.656\|GO:0034220_0.651\|GO:0005215_0.614\|GO:0015267_0.614\|GO:0022803_0.614\|GO:0022857_0.614\|GO:0005216_0.613\|GO:0015075_0.613\|GO:0022836_0.595\|GO:0006812_0.584\|GO:0098655_0.580\|GO:0043226_0.579\|GO:0015276_0.570\|GO:0022834_0.570\|GO:0008324_0.558\|GO:0005261_0.557\|GO:0043855_0.550\|GO:0005488_0.536\|GO:0043227_0.525\|GO:0099094_0.525\|GO:0005217_0.516\|GO:0005221_0.516\|GO:0032991_0.512	IPR000595+533-637_533-647_533-655_554-639+\|IPR005821+221-462+\|IPR014710+526-666+\|IPR018488+560-576_599-619+\|IPR018490+460-656+\|IPR050866+118-675+	SM00100+533-655+	PF00027+554-639+Cyclic_nucleotide-binding_domain\|PF00520+221-462+Ion_transport_protein	G3DSA:1.10.287.630:FF:000001+461-524+Cyclic_nucleotide-gated_channel_alpha_3\|G3DSA:1.10.287.70:FF:000072+220-457+Cyclic_nucleotide_gated_channel_beta_3\|G3DSA:2.60.120.10:FF:000078+525-668+Cyclic_nucleotide-gated_channel	PTHR45638+118-675+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-125;692-747	1.000	126-691	2mng_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.750	84744.420	8.750	17.500	25.837	11.780	46.452	53.548	14.592	11.245	48.594

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	810.951	2424.079	1022.731	566.130	226.106	130.998	287.872	574.057	571.101	1157.594	906.240

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.476	-2.235	-0.743	-1.355	-0.774	1.146	2.032	-0.855	—	—	—	—	—

No JSON data available for plots.

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