Hg_chrom7_TN10mRNA_14254
Organism: Heterodera glycines Gene Locus: chr7:6067542-6068739 Feature type: polypeptideProtein Sequence
Length: 254
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.87 | 0.732 | 1.002 | 0.407 | 1.378 | 1.211 | 0.937 | 0.984 | 1.75 | 1.064 | 1.014 | 1.39 | 0.656 | 0.681 | 1.045 | 0.9 | 0.904 | 1.253 | 0.303 | 1.042 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13452
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.981
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKSIPTLQDERTIRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.816
|
0.216
|
0.015
|
0.619
|
0.127
|
0.050
|
0.047
|
0.006
|
0.020
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011390
|
1.000
|
1.000
|
Hsc_gene_8302.t1
|
Hsc_gene_8302.t1
|
— |
Q95005.1 Proteasome subunit alpha type-7 [Caenorhabditis elegans]
|
KAI3409755.1 Proteasome subunit alpha type-7 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005839|GO:0006511|GO:0019773|GO:0051603
|
GO:0005575_0.898|GO:0110165_0.886|GO:0005622_0.831|GO:0005737_0.742|GO:0043226_0.713|GO:0016020_0.705|GO:0043229_0.694|GO:0043227_0.637|GO:0043231_0.627|GO:0032991_0.574|GO:0008150_0.532
|
IPR000426+4-26+|IPR001353+27-211+|IPR023332+19-239+|IPR029055+3-213_3-253+|IPR050115+1-215+
|
SM00948+4-26+
|
PF00227+27-211+Proteasome_subunit|PF10584+4-26+Proteasome_subunit_A_N-terminal_signature
|
G3DSA:3.60.20.10:FF:000004+1-234+Proteasome_subunit_alpha_type-4
|
PTHR11599+1-215+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
251-254
|
1.000
|
1-250
|
8yvp_N
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.505
|
28103.080
|
5.712
|
-2.500
|
27.559
|
8.268
|
47.244
|
52.756
|
13.780
|
13.780
|
48.819
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
4021.939
|
1518.664
|
2980.267
|
4755.809
|
5197.030
|
4170.118
|
2960.843
|
2946.492
|
3321.535
|
5906.374
|
4798.586
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.744
|
1.510
|
0.783
|
0.096
|
-0.302
|
-0.483
|
-0.606
|
— | — | — | — | — | — |
No JSON data available for plots.