Hg_chrom7_TN10mRNA_14256
Organism: Heterodera glycines Gene Locus: chr7:6070992-6072895 Feature type: polypeptideProtein Sequence
Length: 364
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.415 | 1.214 | 1.049 | 0.853 | 1.053 | 0.845 | 0.425 | 1.374 | 1.404 | 1.485 | 0.957 | 1.939 | 1.068 | 0.687 | 1.29 | 1.256 | 0.901 | 0.791 | 0.845 | 1.697 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13454
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.942
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.443
|
0.216
|
0.036
|
0.459
|
0.094
|
0.138
|
0.122
|
0.064
|
0.124
|
0.392
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000611
|
6.000
|
1.000
|
Hsc_gene_8261.t1
|
Hsc_gene_19742.t1;Hsc_gene_8233.t1;Hsc_gene_8261.t1
|
— | — |
KAI6224279.1 CYTH-like domain-containing protein [Aphelenchoides fujianensis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.955|GO:0003674_0.834|GO:0032501_0.773|GO:0005488_0.762|GO:0042592_0.687|GO:0097159_0.686|GO:0048871_0.676|GO:0001894_0.670|GO:0001895_0.670|GO:0045494_0.670|GO:0060249_0.670|GO:0036094_0.667|GO:0043167_0.666|GO:0008289_0.659|GO:0005543_0.656|GO:0043168_0.656|GO:1901363_0.655|GO:0000166_0.654|GO:0097367_0.654|GO:1901265_0.654|GO:0005525_0.650|GO:0017076_0.650|GO:0019001_0.650|GO:0032553_0.650|GO:0032555_0.650|GO:0032561_0.650|GO:0035091_0.650|GO:0035639_0.650|GO:0070300_0.650
|
IPR053227+52-199+
|
— | — | — |
PTHR34932+52-199+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-364
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.695
|
42505.760
|
7.840
|
7.000
|
27.473
|
13.462
|
50.275
|
49.725
|
15.385
|
12.088
|
43.681
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
761.573
|
728.659
|
585.111
|
479.637
|
396.397
|
380.223
|
271.556
|
687.623
|
590.366
|
1565.656
|
1147.675
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.546
|
-0.740
|
-0.178
|
-0.306
|
— |
-0.476
|
0.751
|
-1.199
|
— | — | — | — | — |
No JSON data available for plots.