Hg_chrom7_TN10mRNA_14257
Organism: Heterodera glycines Gene Locus: chr7:6074100-6074819 Feature type: polypeptideProtein Sequence
Length: 196
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.356 | 0.831 | 1.206 | 0.528 | 0.595 | 1.57 | 0.607 | 1.02 | 0.907 | 1.655 | 1.16 | 1.801 | 0.992 | 1.276 | 2.395 | 0.729 | 0.92 | 0.696 | 1.57 | 0.6 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13455
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
1-32
|
0.981
|
15-35
|
0.994
|
— | — |
0.000
|
— | — |
0.062
|
0.975
|
0.018
|
0.117
|
0.023
|
0.005
|
0.011
|
0.018
|
0.026
|
0.028
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011392
|
1.000
|
1.000
|
Hsc_gene_8304.t1
|
Hsc_gene_8304.t1
|
— |
Q61JI9.1 Large ribosomal subunit protein bL35m [Caenorhabditis briggsae]
|
KAI6240907.1 39S ribosomal protein L35, mitochondrial [Aphelenchoides fujianensis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.907|GO:0110165_0.907|GO:0005622_0.881|GO:0043226_0.851|GO:0016020_0.842|GO:0043229_0.841|GO:0043227_0.810|GO:0043231_0.782|GO:0005737_0.774|GO:0005739_0.577
|
IPR019338+10-136+
|
— | — | — |
PTHR15909+10-136+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
196-196
|
1.000
|
1-195
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.595
|
23097.870
|
11.052
|
20.000
|
31.633
|
9.694
|
52.041
|
47.959
|
21.429
|
10.204
|
41.837
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1562.117
|
745.476
|
1199.157
|
1627.488
|
2650.731
|
1993.911
|
1316.393
|
1667.949
|
624.884
|
2165.183
|
1505.055
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.456
|
0.989
|
0.549
|
0.672
|
-0.396
|
-0.588
|
-0.361
|
— |
-1.907
|
— | — | — | — |
No JSON data available for plots.