Hg_chrom7_TN10mRNA_14258
Organism: Heterodera glycines Gene Locus: chr7:6075000-6075917 Feature type: polypeptideProtein Sequence
Length: 201
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.752 | 0.81 | 0.905 | 0.858 | 1.493 | 1.276 | 0.474 | 0.498 | 0.553 | 1.345 | 1.131 | 2.341 | 1.658 | 0.287 | 1.32 | 1.279 | 1.06 | 1.055 | 0.765 | 0.732 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13456
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.801
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane|lysosome_vacuole
|
— | — |
13-36
|
0.907
|
— | — | — | — |
0.000
|
— | — |
0.199
|
0.394
|
0.028
|
0.369
|
0.409
|
0.694
|
0.597
|
0.040
|
0.612
|
0.050
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011393
|
1.000
|
1.000
|
Hsc_gene_8305.t1
|
Hsc_gene_8305.t1
|
— |
Q7ZUN8.1 Synaptobrevin homolog YKT6 [Danio rerio]
|
KAI1721162.1 regulated-SNARE-like domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.910|GO:0110165_0.910|GO:0005622_0.808|GO:0016020_0.772|GO:0005737_0.750|GO:0008150_0.676|GO:0043226_0.626|GO:0043229_0.590|GO:0071944_0.583|GO:0043227_0.581|GO:0005886_0.570|GO:0043231_0.558|GO:0009987_0.556
|
IPR010908+8-130_20-103_45-129_46-107+|IPR011012+1-140+|IPR042855+139-196_141-201+
|
SM01270+45-129+
|
PF00957+139-196+Synaptobrevin|PF13774+46-107+Regulated-SNARE-like_domain
|
— |
PTHR45806+1-200+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-201
|
6j7x_C
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.538
|
23090.410
|
7.066
|
1.000
|
28.856
|
10.448
|
52.736
|
47.264
|
14.925
|
13.930
|
45.274
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
862.147
|
726.133
|
914.670
|
844.863
|
1173.674
|
1055.264
|
1247.711
|
1139.590
|
916.096
|
421.607
|
633.531
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
0.443
|
— |
0.252
|
— |
0.273
|
— | — | — | — | — |
No JSON data available for plots.