Hg_chrom7_TN10mRNA_14261
Organism: Heterodera glycines Gene Locus: chr7:6087574-6088376 Feature type: polypeptideProtein Sequence
Length: 137
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.849 | 1.358 | 0.265 | 1.51 | 1.095 | 1.497 | 0.869 | 3.285 | 0.973 | 1.085 | 1.327 | 0.859 | 0.608 | 0.702 | 0.894 | 0.938 | 0.598 | 0.774 | 1.123 | 1.503 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13459
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— |
KYKEGK,PVEKRRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.743
|
0.193
|
0.019
|
0.683
|
0.267
|
0.197
|
0.121
|
0.010
|
0.280
|
0.022
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011396
|
1.000
|
1.000
|
Hsc_gene_8309.t1
|
Hsc_gene_8309.t1
|
— |
Q9U3G6.1 Protein yippee-like F37A8.5 [Caenorhabditis elegans]
|
KAI3409743.1 Protein yippee-like 2 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.858|GO:0009987_0.727|GO:0065007_0.510|GO:0050789_0.505
|
IPR004910+25-120+|IPR034751+23-120+|IPR039058+14-117+
|
— |
PF03226+25-120+Yippee_zinc-binding/DNA-binding_/Mis18,_centromere_assembly
|
— |
PTHR13848+14-117+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;129-137
|
1.000
|
2-128
|
8qbn_Y
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.781
|
15568.760
|
9.190
|
11.500
|
27.737
|
15.328
|
49.635
|
50.365
|
19.708
|
8.029
|
45.255
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
992.409
|
1953.985
|
768.184
|
644.166
|
511.360
|
638.375
|
644.645
|
2891.307
|
414.366
|
1011.505
|
755.588
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.575
|
-1.738
|
-0.146
|
-0.365
|
0.335
|
— |
2.069
|
-2.019
|
— | — | — | — | — |
No JSON data available for plots.