Hg_chrom7_TN10mRNA_14262
Organism: Heterodera glycines Gene Locus: chr7:6089030-6089714 Feature type: polypeptideProtein Sequence
Length: 167
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.557 | 0.696 | 1.633 | 1.445 | 2.096 | 1.228 | 0.855 | 1.198 | 1.198 | 1.295 | 0.544 | 0.352 | 0.665 | 0.461 | 1.955 | 0.684 | 0.785 | 0.998 | 0.921 | 0.352 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13460
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
0.988
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.549
|
0.236
|
0.012
|
0.575
|
0.156
|
0.063
|
0.074
|
0.001
|
0.130
|
0.063
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011397
|
1.000
|
1.000
|
Hsc_gene_8310.t1
|
Hsc_gene_8310.t1
|
— |
P54357.1 Myosin-2 essential light chain [Drosophila melanogaster]
|
KAI1721156.1 myosin-2 essential light chain [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0005575_0.843|GO:0110165_0.827|GO:0005622_0.773|GO:0008150_0.756|GO:0043226_0.622|GO:0005737_0.616|GO:0009987_0.614|GO:0043229_0.602|GO:0003674_0.564
|
IPR002048+9-44_85-120+|IPR011992+9-149+|IPR050230+7-149+
|
— | — |
G3DSA:1.10.238.10:FF:000003+3-152+Calmodulin_A
|
PTHR23048+7-149+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
145-167
|
1.000
|
1-144
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.930
|
19075.220
|
4.442
|
-12.000
|
37.126
|
7.186
|
54.491
|
45.509
|
15.569
|
21.557
|
46.707
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
2353.659
|
396.548
|
176.470
|
696.459
|
942.226
|
4289.846
|
3224.521
|
11421.863
|
1015.356
|
1605.265
|
1352.447
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.397
|
0.675
|
2.089
|
0.405
|
2.201
|
-0.401
|
1.310
|
-1.682
|
— | — | — | — | — |
No JSON data available for plots.